Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51060 586 / 0 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT5G47910 583 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT5G07390 526 / 6e-179 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT4G25090 498 / 1e-168 Riboflavin synthase-like superfamily protein (.1.2) AT1G09090 432 / 7e-146 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT1G64060 408 / 2e-132 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT1G19230 372 / 4e-119 Riboflavin synthase-like superfamily protein (.1.2) AT4G11230 341 / 4e-107 Riboflavin synthase-like superfamily protein (.1) AT5G60010 322 / 2e-100 ferric reductase-like transmembrane component family protein (.1) AT3G45810 311 / 6e-96 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022434 [exp] 956 / 0 AT5G51060 1276 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Lus10043017 [exp] 847 / 0 AT5G47910 1276 / 0.0 respiratory burst oxidase homologue D (.1) Lus10032517 [exp] 846 / 0 AT5G47910 1273 / 0.0 respiratory burst oxidase homologue D (.1) Lus10029896 [exp] 544 / 0 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10020644 [exp] 420 / 9e-140 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10032308 [exp] 410 / 3e-133 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10028755 [exp] 404 / 4e-131 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10033423 [exp] 392 / 2e-127 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10024683 [exp] 381 / 1e-122 AT5G60010 742 / 0.0 ferric reductase-like transmembrane component family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G111600 [exp] 781 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.015G109800 [exp] 778 / 0 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.003G159800 [exp] 621 / 0 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.001G070900 [exp] 605 / 0 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.005G026200 [exp] 541 / 0 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.001G098300 [exp] 425 / 3e-139 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.003G133300 [exp] 424 / 6e-139 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.006G137300 [exp] 388 / 3e-125 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.006G097200 [exp] 345 / 1e-109 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 333 / 6e-105 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component CL0220 [flax] [poplar] EF_hand PF08414 [flax] [poplar] NADPH_Ox Respiratory burst NADPH oxidase
Representative CDS sequence Show only first row Show all	>Lus10016740 pacid=23149147 polypeptide=Lus10016740 locus=Lus10016740.g ID=Lus10016740.BGIv1.0 annot-version=v1.0 ATGAGTACAGAAGAACAGCATCCCCCATGGGAGACAGAGCTGGTGGGAGTTGACAGGGTACCCAACAGTGGGCCATTAAGCGGCCCTCTTAACAAAAAAG GTGGAAGAAAGAGCGCGAGGTTCAACATACCTGCTGATCAGACTAGCTCGTCCGACCAGCAGTATGTTGAGATCACGCTCGATCTCAGAGACGACTCGGT GGCCGTTCACAGCGTTAAAGCTTCCAACGGCACAGAGGAAGATCCCGAGATGACACTTCTAGCCAAAGGCTTGGAGAAGCGGTCGGCTTCCAATCTTGGT TCCTCTGCGATGAGAAGTGCTTCTGCTCGAATCCGTCAAGTTTCTCAAGAGCTGAGGCGGCTCACTTCCATTAACAAAAGGCCCACGGGTCGGCTTGACA GGACCAAGTCGGCAGCGGCTCATGCTCTCAAGGGTCTCAAATTCATCAGTAAGGCCGACGGTGGTTCTGGATGGGTTGCTGTGGAGAAGAGGTTCGATGA AATCACCGATGGGATGCTTCCTCGCTCTCGCTTTGGGGAATGCATTGGAATGAAGGAGTCAAAGGAATTCGCCTTGGAGTTGTATGATACTCTCGCTAGA AAGAGAAACATTCAGAGGGATTCAATCACCAAGTCTGAGTTGAAGGACTTCTGGGATCAGATTTCCAACCAGAGCTTCGATTCCAGGCTCCAGACTTTCT TTGACATGGTTGATAAAGATGCAGATGGTAGAATTACTGAAGAGGAAGTCAAGGAGATCATTACCCTCAGTGCATCTGCAAACAAACTCTCGACTATCCA AAAACAAGCAGAGGAGTATGCTGCTTTGATTATGGAAGAATTGGATCCTGAACACCATGGATACATCATGATAGAGAGCTTGGAAATGCTGTTGCTGCAA GGACCAAGCCAGTCTGTGAGAGCAGCAGACAGCAAGAACCTGAGCAAACTGTTGAGCCAGAAGCTAAAGCCGACACTGGATGAGAACCCAATCAGTAGAT GGTTGAGAGACGCGAAATACTTTTTGCTGGACAACTGGCAGAGAGTTTGGGTGATGGCTCTGTGGATTGGGGTAATGGCTGGCCTATTTGCTTATAAGTA CGTGCAATATCGCAACAGAGCTGCATACGAGGTCATGGGCGCTTGTGTCTGCCTAGCTAAAGGTGCTGCTGAAACACTCAAACTAAATATGGCTTTGATT CTGCTTCCTGTCTGCCGGAACACAATCACATGGCTCAGGAATAAGACCAAACTAGGACTTGCTGTTCCTTTTGATGACAACCTCAACTTTCACAAGGTGA TAGCGGTGGCAATAACAATTGGAGTAGGCATCCATGGCATATCCCATTTGGCCTGTGACTTCCCTCGTCTTCTAGATGCAAGCGATGAGAAATGGGAACT TATGGAGCCATTTTTTGGAGACCAGCCGTCGAGCTACTGGCATTTCGTTAAGTCAAAGGAAGGGGTTACTGGGATTGTGATGGTTATTCTGATGGCGATA GCTTTCACACTTTCCACTCCTTGGTTCAGGCGAAACAAGCTCAATTTGCCACTGCGGAGCCTTTAA
AA sequence Show only first row Show all	>Lus10016740 pacid=23149147 polypeptide=Lus10016740 locus=Lus10016740.g ID=Lus10016740.BGIv1.0 annot-version=v1.0 MSTEEQHPPWETELVGVDRVPNSGPLSGPLNKKGGRKSARFNIPADQTSSSDQQYVEITLDLRDDSVAVHSVKASNGTEEDPEMTLLAKGLEKRSASNLG SSAMRSASARIRQVSQELRRLTSINKRPTGRLDRTKSAAAHALKGLKFISKADGGSGWVAVEKRFDEITDGMLPRSRFGECIGMKESKEFALELYDTLAR KRNIQRDSITKSELKDFWDQISNQSFDSRLQTFFDMVDKDADGRITEEEVKEIITLSASANKLSTIQKQAEEYAALIMEELDPEHHGYIMIESLEMLLLQ GPSQSVRAADSKNLSKLLSQKLKPTLDENPISRWLRDAKYFLLDNWQRVWVMALWIGVMAGLFAYKYVQYRNRAAYEVMGACVCLAKGAAETLKLNMALI LLPVCRNTITWLRNKTKLGLAVPFDDNLNFHKVIAVAITIGVGIHGISHLACDFPRLLDASDEKWELMEPFFGDQPSSYWHFVKSKEGVTGIVMVILMAI AFTLSTPWFRRNKLNLPLRSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10016740 [exp]	0	1
AT1G79710			Major facilitator superfamily ...		Lus10024099 [exp]	1.0	0.8676
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10036682 [exp]	2.4	0.8397
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10016739 [exp]	2.4	0.8414
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Lus10023157 [exp]	2.6	0.8046
AT3G09830			Protein kinase superfamily pro...		Lus10013811 [exp]	5.3	0.7753
AT2G20010			Protein of unknown function (D...		Lus10034947 [exp]	8.1	0.8113
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10034151 [exp]	12.6	0.8046
AT4G39140			RING/U-box superfamily protein...		Lus10041970 [exp]	14.9	0.7763
AT5G39785			Protein of unknown function (D...		Lus10007264 [exp]	19.2	0.7962
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10033909 [exp]	19.6	0.7013

Compare expression of checked genes

Lus10016740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.