Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25805 322 / 4e-109 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022435 [exp] 575 / 0 AT3G25805 387 / 4e-135 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G127200 [exp] 359 / 7e-124 AT3G25805 405 / 4e-142 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016741 pacid=23149078 polypeptide=Lus10016741 locus=Lus10016741.g ID=Lus10016741.BGIv1.0 annot-version=v1.0 ATGAGCACTGTAGTTGTTGTGGTATGCAACAGCCATGGATTGTCCTCCTCCGTCGGAGCAACCAAACCCAACAAATTGAGCATACCGATTCCCTCATCTT GTCGGTGCTTGAGAAGCGAAAAATGGATGGCCAATTTACCCCTCTTTACCAGTCAAAGACCAGCATCCAGTTTCCGCGCCTTGCTATTATGCCACTCGAC TCCCCGACGAAGACCCGCCGTCGTATCGACCACTAGCGATGGTAATTCGAAAGCCGTTCAGGCCGCTTTATGGGTTCTTGAAGGAGTTTACATTTTGTGG CTGTTTCTACTTCCGTATGCCCCCGGAGACCCCGTGTGGGCTATTAGTGCAGAGACCGTGAATTCACTCATTGCCCTTTCTCTCAACTTCTTCTTCATAT TGCCCTTTCTTAATTCTGTGGGGATAAATGTGATTGAAGCCCCAGTTCTTCACCCTATGGCTGAAGGCTTATTCAACTTTGTTATCGGATGGACTTTCAT GTTTGCTCCATTGCTGTTCACGGATATCAGAAGGAATCGATATCCTTGGTCCCTGGATGTCCTCTGGGGTTTTCAGATGTTCCTCACAAACACATTCCTT ATACCGTACATGGCAATCCGGATGCACGAGGGAGATGCAGAAGCTGCTCCAACTAATAAGGGTTCACAACTAGGCATTGTTATGACAAAAGGTGCAGCGA TAGTAGGACTGGTTGGAGCAGCTGTTTGTCTTGAATCCGTGCTGTGGGGGGTTTTCGGACGAGGTGACGATGGTGATTTTGGGAGCATAACAGATCGATG GGAGTTCTTACTTAGTTATCTTGGATCAGAGAGGCTGGCATACGCCTTCATATGGGATATATGTTTGTACATGGTCTTCCAGCCTTGGTTGGTAGGTGAT AATCTGCAAAATGTGGAGGATAGCAAGGTTGATGTGGTGAAATATCTTCGGTTTATCCCGGTACTTGGATTGCTGGCCTACCTGCTCTTCTTGGACGACC CTCACAAGGAAGACAAACTCCAGCCGTAG
AA sequence Show only first row Show all	>Lus10016741 pacid=23149078 polypeptide=Lus10016741 locus=Lus10016741.g ID=Lus10016741.BGIv1.0 annot-version=v1.0 MSTVVVVVCNSHGLSSSVGATKPNKLSIPIPSSCRCLRSEKWMANLPLFTSQRPASSFRALLLCHSTPRRRPAVVSTTSDGNSKAVQAALWVLEGVYILW LFLLPYAPGDPVWAISAETVNSLIALSLNFFFILPFLNSVGINVIEAPVLHPMAEGLFNFVIGWTFMFAPLLFTDIRRNRYPWSLDVLWGFQMFLTNTFL IPYMAIRMHEGDAEAAPTNKGSQLGIVMTKGAAIVGLVGAAVCLESVLWGVFGRGDDGDFGSITDRWEFLLSYLGSERLAYAFIWDICLYMVFQPWLVGD NLQNVEDSKVDVVKYLRFIPVLGLLAYLLFLDDPHKEDKLQP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25805			unknown protein		Lus10016741 [exp]	0	1
AT3G25805			unknown protein		Lus10022435 [exp]	2.4	0.9528
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10020326 [exp]	3.7	0.9451
AT5G07020			proline-rich family protein (....		Lus10005388 [exp]	7.5	0.9350
AT5G01920		STN8	State transition 8, Protein ki...		Lus10014183 [exp]	7.7	0.9289
AT5G01920		STN8	State transition 8, Protein ki...		Lus10022730 [exp]	8.4	0.9305
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10000268 [exp]	8.8	0.9189
AT5G07020			proline-rich family protein (....		Lus10024125 [exp]	8.9	0.9348
AT3G11420			Protein of unknown function (D...		Lus10002713 [exp]	9.4	0.9245
AT4G32590			2Fe-2S ferredoxin-like superfa...		Lus10041038 [exp]	11.2	0.9253
AT5G62165	MADS	FYF, AGL42	FOREVER YOUNG FLOWER, AGAMOUS-...		Lus10031665 [exp]	12.4	0.8553

Compare expression of checked genes

Lus10016741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.