Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50790 287 / 6e-97 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT3G48740 245 / 3e-80 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT5G13170 236 / 5e-77 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT5G23660 232 / 3e-75 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT5G50800 224 / 3e-72 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT4G25010 218 / 9e-70 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT2G39060 209 / 6e-67 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT4G15920 157 / 2e-46 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 144 / 1e-41 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT5G62850 142 / 4e-41 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022436 [exp] 540 / 0 AT5G50790 285 / 5e-96 Nodulin MtN3 family protein (.1) Lus10032553 [exp] 433 / 3e-154 AT5G50790 279 / 9e-94 Nodulin MtN3 family protein (.1) Lus10043190 [exp] 327 / 4e-113 AT5G13170 204 / 5e-65 senescence-associated gene 29 (.1) Lus10023249 [exp] 239 / 1e-78 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10008861 [exp] 238 / 5e-78 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1) Lus10024770 [exp] 234 / 4e-76 AT5G23660 259 / 4e-86 homolog of Medicago truncatula MTN3 (.1) Lus10009782 [exp] 233 / 2e-75 AT5G23660 261 / 8e-87 homolog of Medicago truncatula MTN3 (.1) Lus10015754 [exp] 228 / 1e-73 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10000310 [exp] 226 / 8e-73 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G101400 [exp] 324 / 7e-112 AT5G50790 276 / 7e-93 Nodulin MtN3 family protein (.1) Potri.015G101500 [exp] 320 / 8e-110 AT5G50790 291 / 6e-99 Nodulin MtN3 family protein (.1) Potri.015G101600 [exp] 319 / 2e-109 AT5G50790 276 / 1e-92 Nodulin MtN3 family protein (.1) Potri.012G103200 [exp] 311 / 1e-106 AT5G50790 230 / 1e-74 Nodulin MtN3 family protein (.1) Potri.003G166800 [exp] 245 / 2e-80 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.015G101700 [exp] 240 / 1e-78 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.001G060900 [exp] 231 / 7e-75 AT5G13170 294 / 9e-100 senescence-associated gene 29 (.1) Potri.019G030500 [exp] 209 / 7e-67 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.013G013900 [exp] 168 / 5e-50 AT4G15920 205 / 4e-65 Nodulin MtN3 family protein (.1) Potri.013G013800 [exp] 160 / 2e-47 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10016742 pacid=23149152 polypeptide=Lus10016742 locus=Lus10016742.g ID=Lus10016742.BGIv1.0 annot-version=v1.0 ATGGGGCTCCACTTCTCATTGGTGTTCCTTTTCGGACTATTAGGGAATGCAATATCGTGCCTGGTATGTTTGGCGCCACTGCCGACGTTCTACCAAATAT GGAAGAAGAAAACAAGCCAAGGCTACCAATCAATCCCATACGTGATAGGTCTGTTCAGCGCCATGATGTGGCTCTTCTACGCCATATTCGCCACCGACGC CATGCTCCTCATCACTATCAACGTTTTCACCTTCGTCATGCAAACTATCTACATTGCCATCTTCCTCTTCTACGCCACAAAGCCCGACAGGCTCACCACC ATCAAGCTCGTCTGCTTCTTGAACGTCGTTGGATTCGGAGCCATCTGTACCGTCACCTTGGCCTTCACCCACGGCCTCCTCCGAGTCAAGGTCCTCGGCT GGTTTTGCATGATCTTCTCCCTCTGTGTCTTCGTCGCTCCTCTCGGCATCGTGAGGAAAGTGATAAAAACAAAGAGCGTGGAGTTCATGCCAATCTCCCT CTCCTTCTTCCTCACCCTCAGCGCCGTCATGTGGTTCATGTACGGCTTCCTCAAGAAAGATCCTTACGTCGCTGTTCCCAACATTCTTGGACTGACCTTC GGAGTCCTCCAGATGGTGTTGTACTTGATCTACCGTAAGAGCACTCCTATGACCAAAAACAATAAGGCCTCGGTGGAAGAGGTACCGGCGGTGGTGATCG ACGTAGGAAAGCTGGCTGCGGCGGCGGCAGATCAGCATAATAACCAAGTGGTCCCTGTGGATCGAGCAGTAGTGCCACAGCAGCTAGTAATCCAGCTAAT GAACGTAGTGGCAGCTGCGGAACAAGAAGAAGAAGAAGAACGAATGAGGAAGAGCAAGAACAAAGAGGCGGTACACAGGGATGCAGTTGCTGTGGCATGA
AA sequence Show only first row Show all	>Lus10016742 pacid=23149152 polypeptide=Lus10016742 locus=Lus10016742.g ID=Lus10016742.BGIv1.0 annot-version=v1.0 MGLHFSLVFLFGLLGNAISCLVCLAPLPTFYQIWKKKTSQGYQSIPYVIGLFSAMMWLFYAIFATDAMLLITINVFTFVMQTIYIAIFLFYATKPDRLTT IKLVCFLNVVGFGAICTVTLAFTHGLLRVKVLGWFCMIFSLCVFVAPLGIVRKVIKTKSVEFMPISLSFFLTLSAVMWFMYGFLKKDPYVAVPNILGLTF GVLQMVLYLIYRKSTPMTKNNKASVEEVPAVVIDVGKLAAAAADQHNNQVVPVDRAVVPQQLVIQLMNVVAAAEQEEEEERMRKSKNKEAVHRDAVAVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10016742 [exp]	0	1
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10029787 [exp]	2.6	0.9098
AT3G29240			Protein of unknown function (D...		Lus10005224 [exp]	4.2	0.8980
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015287 [exp]	6.0	0.8934
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023525 [exp]	7.1	0.8539
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10024029 [exp]	9.4	0.8679
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10006778 [exp]	9.8	0.8857
AT5G51260			HAD superfamily, subfamily III...		Lus10038847 [exp]	9.9	0.8970
					Lus10015565 [exp]	15.9	0.8803
					Lus10040811 [exp]	16.1	0.8898
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024577 [exp]	17.5	0.8234

Compare expression of checked genes

Lus10016742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.