Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51140 102 / 3e-26 Pseudouridine synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022437 [exp] 0 / 1 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G101300 [exp] 109 / 5e-29 AT5G51140 512 / 0.0 Pseudouridine synthase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016743 pacid=23149099 polypeptide=Lus10016743 locus=Lus10016743.g ID=Lus10016743.BGIv1.0 annot-version=v1.0 ATGAGGAAGAGGAAGAGGAAGGAAGGAAAAAGACATGGATATTGTCTGGCGAACGCCGGCAAATCCGCCGGAGATGAACGACTACATCATTCGAAACGGT CAAGAATCGTTGGAACGGGAAGACAATTGTTGATTTGTTCGCGAAATAGTTCAAAGGCAGATGGTACGATTACTACGTATGACAATGTAGATGGTCATTC ACGAGTTAGTGCTGTGAAGAGTGGACGGATTCAGGTTGATGGAGAGACGATTCCAGTCTCTTATGTGGTCAAAACATCTCAAAAGATAAACCACTTTGTA CACAGGCATGAACCACCAGTCATGGCCTGCGATATTTCCGTTCTGCAAGAAGATCCTGATGTTGTGACTATTTCAAAGCCAGCAACTGTACCTATTGAAG CTGGATTAGTGCATAAACAGTATGTAGCGAGGGTTGTTGGTGTATTCCCTGAAGATGAGGTATGA
AA sequence Show only first row Show all	>Lus10016743 pacid=23149099 polypeptide=Lus10016743 locus=Lus10016743.g ID=Lus10016743.BGIv1.0 annot-version=v1.0 MRKRKRKEGKRHGYCLANAGKSAGDERLHHSKRSRIVGTGRQLLICSRNSSKADGTITTYDNVDGHSRVSAVKSGRIQVDGETIPVSYVVKTSQKINHFV HRHEPPVMACDISVLQEDPDVVTISKPATVPIEAGLVHKQYVARVVGVFPEDEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51140			Pseudouridine synthase family ...		Lus10016743 [exp]	0	1
					Lus10017807 [exp]	4.5	0.7894
					Lus10006038 [exp]	4.7	0.7689
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10003353 [exp]	7.7	0.7805
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10010079 [exp]	7.9	0.7848
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10005437 [exp]	13.9	0.8151
AT1G60560			SWIM zinc finger family protei...		Lus10025765 [exp]	15.5	0.7839
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10007555 [exp]	18.9	0.7898
AT1G50910			unknown protein		Lus10043058 [exp]	19.1	0.7864
AT1G63110			GPI transamidase subunit PIG-U...		Lus10029590 [exp]	19.5	0.7707
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004036 [exp]	21.9	0.7205

Compare expression of checked genes

Lus10016743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.