Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24972 171 / 1e-54 TPD1 tapetum determinant 1 (.1) AT1G32583 160 / 4e-50 unknown protein AT4G32080 48 / 2e-07 unknown protein AT1G05835 45 / 3e-06 PHD finger protein (.1) AT4G32090 44 / 8e-06 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) AT4G32110 42 / 5e-05 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022437 [exp] 238 / 1e-76 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2) Lus10001911 [exp] 127 / 1e-37 AT1G32583 157 / 5e-50 unknown protein Lus10026289 [exp] 55 / 1e-09 AT4G32090 72 / 5e-17 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Lus10042384 [exp] 52 / 1e-08 AT4G32110 81 / 1e-20 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Lus10012177 [exp] 49 / 8e-08 AT4G32090 66 / 6e-15 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Lus10007569 [exp] 43 / 1e-05 AT4G32110 64 / 2e-14 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G102900 [exp] 184 / 2e-59 AT1G32583 160 / 2e-50 unknown protein Potri.015G101000 [exp] 182 / 8e-59 AT1G32583 157 / 5e-49 unknown protein Potri.006G017600 [exp] 152 / 3e-47 AT1G32583 187 / 5e-61 unknown protein Potri.008G105600 [exp] 107 / 9e-30 AT4G24972 106 / 2e-29 tapetum determinant 1 (.1) Potri.010G246900 [exp] 95 / 2e-25 AT1G32583 104 / 3e-29 unknown protein Potri.010G246300 [exp] 79 / 5e-19 AT1G32583 85 / 1e-21 unknown protein Potri.010G145501 [exp] 68 / 4e-15 AT1G32583 74 / 1e-17 unknown protein Potri.002G233000 [exp] 56 / 2e-10 AT1G05835 111 / 2e-32 PHD finger protein (.1) Potri.004G167900 [exp] 42 / 3e-05 AT4G32090 117 / 7e-35 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Potri.009G129400 [exp] 39 / 0.0003 AT4G32090 117 / 7e-35 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016744 pacid=23149040 polypeptide=Lus10016744 locus=Lus10016744.g ID=Lus10016744.BGIv1.0 annot-version=v1.0 ATGGGTATTCTCACCGCCACCGTGGTTGGGATGGTGGTGCTAGTTCTTCTGGTATCAGGTAGTGGAAGGAAGCGGAGTTTCAGAAACAATGCCATAATTT CATATCCTATATTTCTCATTCGATTGTATTTTTCTTTTGGTCGTGGTACTGATAGTCCATGCCCTCCAGGAGGATGCCCACTCGCCTTCCCTCGACACCG CAAGCTGCTTAGCCCTTCTGGCGGTGCAATGGAGAACAAGGAGGAGCCCAACAGAATATGGGGAGAAAAGTGTACAACGAGTGACATAGTGATTAATCAG GGACAAACATCTCCTCTCCCCAGCGGGATACCAACATACACCGTAGAGATAACCAACCTCTGTGTCAGCGGCTGCGACATCACAAGGATCCACATTTCAT GCGGATGGTTCAGCTCTGCACGTCTCATCAACCCAAGGGTGTTCAAGCGCCTTGGCTACAATGACTGCCTTGTCAACGATGGCAAGCCTTTGCTCAACGG AGCTACACTTTCCTTTCAGTACGCCAACACTTATTCTTACCCTCTATCCGTCTCTTCTGTGGTTTGTCCTTGA
AA sequence Show only first row Show all	>Lus10016744 pacid=23149040 polypeptide=Lus10016744 locus=Lus10016744.g ID=Lus10016744.BGIv1.0 annot-version=v1.0 MGILTATVVGMVVLVLLVSGSGRKRSFRNNAIISYPIFLIRLYFSFGRGTDSPCPPGGCPLAFPRHRKLLSPSGGAMENKEEPNRIWGEKCTTSDIVINQ GQTSPLPSGIPTYTVEITNLCVSGCDITRIHISCGWFSSARLINPRVFKRLGYNDCLVNDGKPLLNGATLSFQYANTYSYPLSVSSVVCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24972		TPD1	tapetum determinant 1 (.1)		Lus10016744 [exp]	0	1
AT2G45080		CYCP3;1	cyclin p3;1 (.1)		Lus10028174 [exp]	2.2	0.8769
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10037147 [exp]	5.3	0.8427
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036779 [exp]	8.4	0.8264
AT3G20530			Protein kinase superfamily pro...		Lus10040050 [exp]	11.1	0.7638
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10040415 [exp]	14.2	0.8372
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031853 [exp]	16.3	0.7804
AT5G12000			Protein kinase protein with ad...		Lus10006021 [exp]	16.4	0.8028
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10016939 [exp]	18.3	0.7542
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	19.2	0.8330
AT4G27610			unknown protein		Lus10043458 [exp]	27.9	0.8123

Compare expression of checked genes

Lus10016744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.