Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24970 666 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G50780 645 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G13130 559 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1.2) AT4G36290 396 / 1e-128 CRT1 compromised recognition of TCV 1 (.1) AT4G36280 394 / 8e-128 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT1G19100 395 / 1e-127 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36270 273 / 2e-83 ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022438 [exp] 1167 / 0 AT4G24970 736 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10041578 [exp] 598 / 0 AT4G24970 662 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10014276 [exp] 390 / 7e-127 AT4G36290 697 / 0.0 compromised recognition of TCV 1 (.1) Lus10039959 [exp] 362 / 2e-115 AT1G19100 640 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10042100 [exp] 355 / 2e-110 AT1G19100 667 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10025978 [exp] 303 / 1e-94 AT4G36280 487 / 7e-168 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10001240 [exp] 274 / 7e-83 AT1G19100 532 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100900 [exp] 706 / 0 AT4G24970 773 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.012G102800 [exp] 698 / 0 AT5G50780 769 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.003G167201 [exp] 607 / 0 AT4G24970 671 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.005G118400 [exp] 413 / 1e-134 AT4G36290 706 / 0.0 compromised recognition of TCV 1 (.1) Potri.012G089000 [exp] 389 / 4e-125 AT1G19100 741 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.015G079400 [exp] 380 / 1e-122 AT1G19100 706 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.011G144500 [exp] 82 / 5e-16 AT1G19100 114 / 5e-26 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016745 pacid=23149130 polypeptide=Lus10016745 locus=Lus10016745.g ID=Lus10016745.BGIv1.0 annot-version=v1.0 ATGCGGCCGCCGCCGGAGTCAAGGGACAACGGTAGTCTAATGGTGAATGTTCAGAACTCCAAGCAGTTTTGGAAAGCCGGAGACTATGAAGTAGAAGGAG GAACGGTTGCCGATTGCGAGGTTTCTTCTGGTAATTGCTTCCCTCCTATCATCATGCATTTCGTTTTAGGTGGTATGGAGCGTGTTAGGGTTCATCCCAA GTTCTTACATTCCAATGCAACCAGCCACAAGTGGGCTCTTGGAGCCTTCGCCGAACTTTTGGACAATTCATTGGATGAGGTCTGTAATGGGGCGACACTA GTGAAGATAGACATGCTGAAAAATAAGAAAGATGGTAGCCCAATGCTATTGATTGAAGACAATGGGGGTGGGATGGATTCAGATAAAATGCGGAAGTGCA TGTCTTTAGGTTTTTCTGCAAAGAGCAAAATGGATAGCACCATTGGACAGTGTAACTCACTGTACTTTGCTGAAGCTTTTCAATTCTTCAGTTATGGCAA TGGGTTCAAGACTAGTACCATGAGGCTTGGTGCTGATGTTATTGTATTTTCTCGATGTTCTGGGCAAAATGGCAAGGGACCTACCCAGAGCATTGGACTG CTATCATACACGTTCCTGCGGAGTACAGGAAAAGAGGATATTGTAGTTCCAATGCTTGCCTATGAAAGAGTAGGAAAGAAATCAAACAGGATTGCTCCAC TTTCTGATGATGATTGGACAAGAACTGTGAAAACTATTCTTCAGTGGTCTCCATTTGCTAGCGAGACTGATCTTCTGCATGAGTTGGATGTGTTACCAGA TCATGGAACACGCATAATAATTTACAATCTTTGGGAGGATGACGAAGGATTCTTGGAGCTTGATTTTGATTCCGACCCTCATGACATACAACTCCGAGGT GTTAATCGGGAAGAGAAAAACATACAAATGGCTCAAGAGTATCCCAATTCTAGGCACTTCCTCACCTATAGACATTCTTTAAGGAGTTATGCTTCAATTC TCTATCTCAGAATTCCTCCTAGCTTTCGGATCATCCTTCGGGGAAAAGATGTTGAGCACCACAATATAGTAAATGACATGATGATGTCTGAGGAGGTGAC ATATCGGCCGCAGGCTAGTATTGATGGGGTGATGAAGGACTATAGTAGTATAACTGCCATTGTTACTATTGGATTTGTCAAGGATGCAAAGTACCACATT GATGTTCAAGGGTTCAATGTCTATCACAAGAATCGGCTTATCAAGCCATTTTGGAGGCTCTGGAATGCTGCAGGAAGCGATGGTCGTGGAGTTATAGGTG TCTTAGAAGCTAATTTTGTTGAACCAGCCCATGATAAGCAGGGTTTTGAACGTACAACTGTTCTGGCAAGGCTTGAGTCTCGTCTAATACAAATGCAAAA GAATTACTGGGGTTCCAACTGTCACAAGATTGGCTATGCTCCGAGACGTAATAAGAAAGCGGCAAGTGAAGAAGCAGAAGCAACCTCCTCACTTGGTCAG AACTTAGGAGGAAAAGCATCAGAAAGATCCGGGAAAGATGTGCAAGATGGGAAGCAACATTATTCAGGGAAAGGAAACAGTGTAACAAGGTCTCAAGTTA AATCTAGAAAAGTATTGGAATCTAATGAACCTTCATCGGTGGATCCAAATGAAAGTAACATGCGTGATTCTTCCCATCTGATAAAAGCAAGTAGTAGCAC TCCTACCAGGAAATCATTTGGTACAGTGTTGCATGAAACTCCGTATTTCACACGCTCAGGAGATACAAGATCTCGCAATAAAGGCTCCACTCCAGCTAGA GAATATGTTCCACCTGCTGCCATACATACCCAGGAGAAGGTAGTTTCAATGATATGTTTGTCATCTAACTGTGTGGTGGTTGTGGAAAATGTAGGTGAAG ATGTCCAACCACGTGTCGATACAGAAGCTAATGACGAGCGGCTGAAGCAAGAGAACCGCGAACTGAAGGAAAGATTGGAGAGGCGGGAGGGACAGCTTCG ATTGATGAGTTTGAAGTGCCAGAAGTGCAGTGCTCTAAAGACAAAGGTTTTGGATAAAGCAGAGCAGAAGATTGATGATCTGAACAAAGAACAAGAGAGT CTAATTGAAATATTCTCAGAGGAGAAGGAGAGGAGGGAGAAGGAAGAGGATAATTTGAGGAAGAAGTTGAAGGACGCATCGAAAACGATCCAAGAATTGC TAGACAAAGTTAAGTTGCTCGAGAAAATCTAA
AA sequence Show only first row Show all	>Lus10016745 pacid=23149130 polypeptide=Lus10016745 locus=Lus10016745.g ID=Lus10016745.BGIv1.0 annot-version=v1.0 MRPPPESRDNGSLMVNVQNSKQFWKAGDYEVEGGTVADCEVSSGNCFPPIIMHFVLGGMERVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATL VKIDMLKNKKDGSPMLLIEDNGGGMDSDKMRKCMSLGFSAKSKMDSTIGQCNSLYFAEAFQFFSYGNGFKTSTMRLGADVIVFSRCSGQNGKGPTQSIGL LSYTFLRSTGKEDIVVPMLAYERVGKKSNRIAPLSDDDWTRTVKTILQWSPFASETDLLHELDVLPDHGTRIIIYNLWEDDEGFLELDFDSDPHDIQLRG VNREEKNIQMAQEYPNSRHFLTYRHSLRSYASILYLRIPPSFRIILRGKDVEHHNIVNDMMMSEEVTYRPQASIDGVMKDYSSITAIVTIGFVKDAKYHI DVQGFNVYHKNRLIKPFWRLWNAAGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLESRLIQMQKNYWGSNCHKIGYAPRRNKKAASEEAEATSSLGQ NLGGKASERSGKDVQDGKQHYSGKGNSVTRSQVKSRKVLESNEPSSVDPNESNMRDSSHLIKASSSTPTRKSFGTVLHETPYFTRSGDTRSRNKGSTPAR EYVPPAAIHTQEKVVSMICLSSNCVVVVENVGEDVQPRVDTEANDERLKQENRELKERLERREGQLRLMSLKCQKCSALKTKVLDKAEQKIDDLNKEQES LIEIFSEEKERREKEEDNLRKKLKDASKTIQELLDKVKLLEKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10016745 [exp]	0	1
AT4G36050			endonuclease/exonuclease/phosp...		Lus10028455 [exp]	2.2	0.8479
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013870 [exp]	2.2	0.8743
AT5G40270			HD domain-containing metal-dep...		Lus10022228 [exp]	2.8	0.8461
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10016724 [exp]	5.5	0.8319
AT5G67620			unknown protein		Lus10011549 [exp]	6.1	0.8110
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10013723 [exp]	6.5	0.8647
AT4G24290			MAC/Perforin domain-containing...		Lus10035789 [exp]	7.1	0.8009
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001951 [exp]	7.2	0.8205
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10042768 [exp]	8.0	0.8660
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10021586 [exp]	8.7	0.7844

Compare expression of checked genes

Lus10016745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.