Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63550 184 / 4e-51 DEK domain-containing chromatin associated protein (.1.2) AT3G48710 177 / 2e-49 DEK domain-containing chromatin associated protein (.1) AT5G55660 134 / 7e-33 DEK domain-containing chromatin associated protein (.1) AT4G26630 114 / 2e-26 DEK domain-containing chromatin associated protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022439 [exp] 512 / 8e-176 AT3G48710 335 / 2e-108 DEK domain-containing chromatin associated protein (.1) Lus10035905 [exp] 490 / 3e-167 AT3G48710 322 / 3e-103 DEK domain-containing chromatin associated protein (.1) Lus10025759 [exp] 462 / 4e-154 AT3G48710 328 / 1e-103 DEK domain-containing chromatin associated protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G102500 [exp] 213 / 1e-61 AT5G63550 248 / 3e-75 DEK domain-containing chromatin associated protein (.1.2) Potri.015G100700 [exp] 210 / 1e-60 AT5G63550 245 / 6e-74 DEK domain-containing chromatin associated protein (.1.2) Potri.011G093200 [exp] 143 / 2e-36 AT4G26630 199 / 6e-55 DEK domain-containing chromatin associated protein (.1.2) Potri.001G367400 [exp] 142 / 8e-36 AT5G55660 206 / 3e-57 DEK domain-containing chromatin associated protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08766 [flax] [poplar] DEK_C DEK C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016746 pacid=23149089 polypeptide=Lus10016746 locus=Lus10016746.g ID=Lus10016746.BGIv1.0 annot-version=v1.0 ATGTCTTCAAATAATGAGATATATAAGTTGAGTTTGAAGACTTGGGCTGTTGGGGCTTTCATTTTGCATTTTTCATGTTCTGTGGCCTTCAAGTTGTCGA AGAGAAAATCTGATGAGACTTTGCATATGCTTCACACTATACTTTTTGGAAAGAAAGGAAAGGTTCAAAGTATGAAGAGAAATATTGGAAGATTTTCGGG CTTCGTTTGGACTGGGAGTGAGGAAAAACAACAGGAAAAACAAAAGTCAAGAGTGAAGGAAAAGCTTGACAAGTGTGTTAAGGAAAAGCTACTAGACTTC TGTGATGTACTCAATATTCAAGTAACTAAAGCCACCGTGAGAAAGGAAGAACTCAGTGCAAAAATCTTGGAGTTCTTGGAATCTCCTCATGCAACAACTG ATGTTGTGCTTGCTGACAAGGAACAGAAAGTCAAGAGGCGGAGGTCAATGACTGTGAAAAATTCTAGTCCTGGGGAAGCATCAGCTACACCAGCTAAGAG GCAAAAACACACATCTGAGGAAAAACAAACCCCCTCTTCCAAAGGTGATGAAGAGGAAGATGATGATAAGGTTGAATCAGAAGATCTGAATGATCACTCT CAAGTTTCTGTGATATTAGCCTCTTATGATTATCCGATGGCTTTCAAGTTGTCGAAGAGAAAATCTGATGAGACTTTGCATGTTCTTCACACTATACTTT TTGGGAAGAAAGGGAAGGTTCAAAGTATGAAGAGAAATATTGGAAGATTTTCGGGCTTCGTTTGGACTGGGAGTGAGGAAAAACAACAGGAAAAACAAAA GTCAAGAGTGAAGGAAAAGCTTGACAAGTGTGTTAAGGAAAGTCTACTAGACTTCTGTGATGTACTCAATATTCAAGTAACTAAAGCCACCGTGAGAAAG GAAGAACTCAGTGCAAAAATCTTGGAGTTCTTGGAATCTCCTCATGCAACAACTGATGTTGTGCTTGCTGACAAGGAACAGAAAGTCAAGAGGCGGAGGT CAATGACTGGGAAAAATTCAAGCCCTGGGGAAGCATCAGCTACACCAGCTAAGGAAAGATCGGTGGAAAAGAATGGCGATCCAAAGGAGGAAATGCCAAT GCAGAAGTCATCAAGCAAAACTGTTAAGGATACTTCAGGTTTAAAAGGCAAGGAGAAAACCACACTTCGCAAGAGCAGTGCCACCACTAAGGCCGTGAAG AGTACATCAAGATCTAACAAGTCATCTGCTCCTTCAGCAAAACCAGGTCCAGATACTGATGTAGGTTCTGGTTCAGTTTCTAAATCCAAGAGACCTGCAT CAAGGAAACGCAAGGCTGAAGAGCAAGATATTTCAGCAAAGGAAATCACTAAGAAAAACTTGGCAGGCAAGTCAACTGGAAAAGTTTCTGCAAAAGATCA AGGGAAAGGAAAATCAAGCAAGAAGGCCAAGACTGAACCCACAAGAGAAGAGTTGCATGCAGTCGTTGTTGACATCCTGAAAGAAGTTGATTTTAATACA GCAACTTTGTCTGATATTCTCAAGAAACTTGGTAAACACTTCAACGTAGATCTAATGCACAGAAAAGCAGAGGTGAAGGATGTTATAACAGAGGTTATTA ATAACATGTCAGATGAGGATGAAGAAGATGAAGATGACGAAGCTGATGATACTGCTGAGGCGGGAGGGGATGATGGAGATGATGATTAG
AA sequence Show only first row Show all	>Lus10016746 pacid=23149089 polypeptide=Lus10016746 locus=Lus10016746.g ID=Lus10016746.BGIv1.0 annot-version=v1.0 MSSNNEIYKLSLKTWAVGAFILHFSCSVAFKLSKRKSDETLHMLHTILFGKKGKVQSMKRNIGRFSGFVWTGSEEKQQEKQKSRVKEKLDKCVKEKLLDF CDVLNIQVTKATVRKEELSAKILEFLESPHATTDVVLADKEQKVKRRRSMTVKNSSPGEASATPAKRQKHTSEEKQTPSSKGDEEEDDDKVESEDLNDHS QVSVILASYDYPMAFKLSKRKSDETLHVLHTILFGKKGKVQSMKRNIGRFSGFVWTGSEEKQQEKQKSRVKEKLDKCVKESLLDFCDVLNIQVTKATVRK EELSAKILEFLESPHATTDVVLADKEQKVKRRRSMTGKNSSPGEASATPAKERSVEKNGDPKEEMPMQKSSSKTVKDTSGLKGKEKTTLRKSSATTKAVK STSRSNKSSAPSAKPGPDTDVGSGSVSKSKRPASRKRKAEEQDISAKEITKKNLAGKSTGKVSAKDQGKGKSSKKAKTEPTREELHAVVVDILKEVDFNT ATLSDILKKLGKHFNVDLMHRKAEVKDVITEVINNMSDEDEEDEDDEADDTAEAGGDDGDDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48710			DEK domain-containing chromati...		Lus10016746 [exp]	0	1
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10007155 [exp]	1.4	0.9028
AT3G48710			DEK domain-containing chromati...		Lus10022439 [exp]	1.4	0.9219
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10039192 [exp]	5.2	0.9011
AT3G48710			DEK domain-containing chromati...		Lus10025759 [exp]	5.3	0.9004
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10040161 [exp]	6.3	0.8958
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Lus10005783 [exp]	6.5	0.8876
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10004366 [exp]	11.5	0.8698
AT3G53730			Histone superfamily protein (....		Lus10040849 [exp]	12.4	0.8776
					Lus10038266 [exp]	12.5	0.8697
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10004455 [exp]	12.8	0.8660

Compare expression of checked genes

Lus10016746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.