Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63540 290 / 2e-91 BLAP75, ATRMI1 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2) AT5G19950 52 / 7e-07 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022440 [exp] 689 / 0 AT5G63540 452 / 1e-151 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2) Lus10043254 [exp] 47 / 2e-05 AT5G19950 285 / 4e-91 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3) Lus10019397 [exp] 47 / 4e-05 AT5G19950 285 / 2e-91 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100200 [exp] 365 / 6e-121 AT5G63540 468 / 3e-158 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016747 pacid=23149085 polypeptide=Lus10016747 locus=Lus10016747.g ID=Lus10016747.BGIv1.0 annot-version=v1.0 ATGTCTGACATGAATTACTGTGGCACGGGCGTGCTTCCGCCTAATGTTGGTTCGATGCATCTTGTTGATCTCCCTGGACCATTCGTTTATGAGATTGTTA ATATGAGTGCACCCCTCAAAGGCAGGTATCAAGATGCACATTGTGGGCTTAAGAGGTGCCTTAAGTTATCCATGACGGATGGTGTTCAACGTGTGTTTGC CATAGAGTATAAGCTTATCGATAGTCTTAAAGTTTTGGTTCCTGCAGGATTCAAGGTTGCTATTTATAATGTGCATGTGCGACGTGGACTCCTGATGCTG GTACCTGAAGTCATTGAAATTCTAGGAGGAGTGGCGGAGGAGTTGGAGGCAGCACGAATTCGTATTGTTGCAGACGTGAATAAGCCGCCTAGGGCAAAGA GATCAAGGGCAGGAGTTATCCCTCCTTTGGCTACCAGGGGCACCATGGCTGCATGGCCCCTAACTAGTGCCACTGATCCTGGGAGCACAAACGACTCTGC AAATGCTCCTGGGAGTACTAATCCAGGCCACGTCAATGATACTCCCAACATTCCTCAACGCTGTAACCTTTCTGTTAATGTTGGTGGAGGCAGAAATGAT CCTGCCAATGTTTCTAGATCTGCAACTCCATCCACTTTGCAGTCTTCAGTTCCCCATTCTGTTAGCGCTGGTCACAACACTGATCATGTCAATGTTTCTA GATCTACAGCTCGCTGCACTGTACAGTCTGCAATGCCTTGCAATGGTAGGTCAATCAACATTTCTAGATCCACAACTTCTTCTATCACACAGTCCTCGAT ACCCTCTCAATCAGATGACCGAGGGAGAGCAGAACCAATTGTTTCCGATGTCTCAGATAGAGTTGTTTCTGAGATTGAAGGCATGCATATCGATCTATCT CATGTCCACGAGGATACCCATATGGCTGATGAACGTGAACATCCCCTTATTTTATCTGGAAACAGAGAAATCCCTTTTACGTACTTAGCTAGCTTGTCAG CAAAATGGGCTGCCCAAAGGGTAAAAACCTCTCTTCAAGCGAGGATTAAGTGTCTCATCACTGCTGTGAAGGGCTTCCAATACAGGAATGCGGAAAGATA CGGCTTCTATGTAGACGATGGAAGCCTCATCTCTGAGATCATGGTTGATCATCCTGGTACAATGCTTGTAGAGATGAATGAAAATTCGCCTCTTCCAGTT GCCATCGAAAGTAAAGCAAGGGGTCCCTGCTACCGATGCATGGCTGCTTATGAGAAGACTCGAGTCTTGTGCTCCAACGGGTCATCATACCTCAGAGACC ATTACCATTTCTCCATGATCGACATCAAATGTATCATCGCTCTCTGCCTACAGTGTAGAAAGAAATTTGCAGACTGGTTCAGAGGATTAAACTAG
AA sequence Show only first row Show all	>Lus10016747 pacid=23149085 polypeptide=Lus10016747 locus=Lus10016747.g ID=Lus10016747.BGIv1.0 annot-version=v1.0 MSDMNYCGTGVLPPNVGSMHLVDLPGPFVYEIVNMSAPLKGRYQDAHCGLKRCLKLSMTDGVQRVFAIEYKLIDSLKVLVPAGFKVAIYNVHVRRGLLML VPEVIEILGGVAEELEAARIRIVADVNKPPRAKRSRAGVIPPLATRGTMAAWPLTSATDPGSTNDSANAPGSTNPGHVNDTPNIPQRCNLSVNVGGGRND PANVSRSATPSTLQSSVPHSVSAGHNTDHVNVSRSTARCTVQSAMPCNGRSINISRSTTSSITQSSIPSQSDDRGRAEPIVSDVSDRVVSEIEGMHIDLS HVHEDTHMADEREHPLILSGNREIPFTYLASLSAKWAAQRVKTSLQARIKCLITAVKGFQYRNAERYGFYVDDGSLISEIMVDHPGTMLVEMNENSPLPV AIESKARGPCYRCMAAYEKTRVLCSNGSSYLRDHYHFSMIDIKCIIALCLQCRKKFADWFRGLN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63540		BLAP75, ATRMI1	RECQ MEDIATED INSTABILITY 1, D...		Lus10016747 [exp]	0	1
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10018767 [exp]	6.2	0.7582
AT5G52800			DNA primases (.1.2.3)		Lus10014953 [exp]	11.5	0.8402
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10004342 [exp]	13.9	0.7688
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10015820 [exp]	25.7	0.8206
AT2G28130			unknown protein		Lus10016147 [exp]	26.6	0.8143
AT5G65120			unknown protein		Lus10016802 [exp]	27.6	0.8180
AT1G80530			Major facilitator superfamily ...		Lus10030111 [exp]	37.9	0.7406
AT1G02410			cytochrome c oxidase assembly ...		Lus10031633 [exp]	39.8	0.7207
AT4G01270			RING/U-box superfamily protein...		Lus10018817 [exp]	51.6	0.8004
AT1G06590			unknown protein		Lus10043409 [exp]	54.8	0.7789

Compare expression of checked genes

Lus10016747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.