Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48560 1017 / 0 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) AT5G17380 148 / 9e-38 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01330 74 / 2e-13 PDC3 pyruvate decarboxylase-3 (.1) AT4G33070 67 / 2e-11 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01320 64 / 2e-10 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G54960 62 / 8e-10 PDC2 pyruvate decarboxylase-2 (.1) AT1G68890 58 / 2e-08 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029955 [exp] 953 / 0 AT3G48560 981 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022446 [exp] 784 / 0 AT3G48560 702 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035207 [exp] 761 / 0 AT3G48560 800 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032041 [exp] 530 / 0 AT3G48560 565 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022445 [exp] 381 / 3e-129 AT3G48560 325 / 7e-108 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032040 [exp] 266 / 5e-85 AT3G48560 266 / 2e-85 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035359 [exp] 229 / 4e-72 AT3G48560 219 / 3e-69 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10028503 [exp] 117 / 2e-27 AT5G17380 916 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10009141 [exp] 117 / 2e-27 AT5G17380 908 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G098300 [exp] 1049 / 0 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.015G097200 [exp] 1048 / 0 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.004G094600 [exp] 135 / 2e-33 AT5G17380 904 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.004G054100 [exp] 62 / 9e-10 AT4G33070 949 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.010G135500 [exp] 61 / 2e-09 AT1G68890 1931 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1) Potri.016G120100 [exp] 57 / 2e-08 AT4G33070 1070 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.011G064000 [exp] 56 / 8e-08 AT5G01320 962 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.006G102500 [exp] 49 / 7e-06 AT5G01320 1023 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02775 [flax] [poplar] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0254 [flax] [poplar] THDP-binding PF02776 [flax] [poplar] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CL0085 [flax] [poplar] FAD_DHS PF00205 [flax] [poplar] TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain
Representative CDS sequence Show only first row Show all	>Lus10016751 pacid=23149165 polypeptide=Lus10016751 locus=Lus10016751.g ID=Lus10016751.BGIv1.0 annot-version=v1.0 ATGTCCAGAATGGCCGCTAATTCCTCCGCCGCCATCGCTAACACACCCAAGCCTTCCTCCGCCACCAGATCTCTCATCCCTCTTCACCGTCCTTCTTTCT CTTTCTCGTCCTTGAGGCCGCCATCTCATTGCCCTTCTCTCCACATCTCTTGCTCCTCCTCCTTCCTCCCCAAAGTCGCCGCCGCCGCCACCGCCACCAA CACTGCTTCTCCTCTTACTGTCACCTCTCCTTCTTCCAGATTCGCCCCTGACGAGCCCCGTAAAGGCGCTGACATCCTCGTCGAAGCTCTCGAGCGACAA GGGGTTACAGATGTGTTCGCCTATCCTGGCGGCGCCTCAATGGAGATCCACCAGGCGCTCACTCGCTCCAGAACAATCCGAAACGTCCTCCCCCGCCACG AGCAAGGCGGAGTTTTCGCCGCCGAAGGCTATGCTCGTTCATCCGGTAAGCCTGGCATCTGTATTGCTACCTCTGGCCCTGGTGCAACCAATCTCGTCAG TGGCCTTGCCGATGCCCTCCTCGACAGTATCCCCTTAGTCGCCATTACCGGCCAGGTCCCCCGCCGCATGATTGGTACCGACGCCTTTCAGGAGACTCCT ATTGTTGAGGTAACTCGTTCCATTACCAAGCACAACTACCTGGTGCTTGATGTGGATGATATACCTAGGGTTGTCAAAGAGGCTTTTCATTTGGCTACTT CTGGCCGTCCTGGCCCTGTGTTGATTGACGTTCCTAAGGATATTCAGCAGCAATTAGCTGTTCCTAATTGGAACTCTCCCATGAAGTTGCCTGGTTACTT GTCCAGGTTGCCTAAAAATCCTTGCAGGTCCAATTTGGAGGTCATTACTAGGTTCATTTCCGAGTCTAAGAAACCTGTGCTGTACGTAGGGGGAGGATGT TTGAATTCCAGCAACGAATTGAGCAGGTTTGTTGAGCTAACTGGTATTCCTGTGGCAAGCACTTTAATGGGGCTTGGATCTTATCCCGTCGGGGATGACC TTTCATTGCAAATGCTTGGCATGCATGGAACCGTGTATGCAAATTATGCTGTGGAACACAGTGATTTACTCTTGGCATTTGGAGTGAGGTTTGATGATCG TGTGACAGGGAAGCTGGAAGCTTTTGCCAGCAGAGCTAAGATTGTTCACATTGATATTGATCCTGCTGAGATTGGGAAGAACAAGCAGCCACATGCGTCG GTTTGCGGAGATGTGAAGTTAGCGTTGCAGGGGATAAATGAAATTTTGGAAACAGAGGAAGGGAAGAGTAAGATGGATTTTAGTGCCTGGAGGGAAGAGT TGAATGAACAGAAGTTGAAGCATCCATTGACTTACAAGACTTTCGGAGAAGCCATTCCTCCTCAGCATGCTATCGAGGTCCTTGATGAATTGACTAATGG GGAAGCAATAATTAGCACTGGGGTTGGACAGCATCAGATGTGGGCTGCTCAGTATTACAAGTACAAGAGACCGCGCCAGTGGTTGACATCAGGAGGACTC GGGGCTATGGGTTTTGGACTGCCTGCTGCAATGGGGGCTGCTGTTGCTAACCCAGGTGCTGTTGTCGTTGATATTGACGGTGATGGGAGTTTCATGATGA ATGTTCAAGAGCTGGCAACTATTCGGGTGGAGAATTTACCGGTGAAGATGATGCTGTTGAATAATCAGCACTTGGGTATGGTGGTACAGTGGGAAGATCG TTTCTACAAAGCGAATAGAGCTCACACATATCTAGGGGATCCAGCAAGGGAATCGGAGATATTCCCGAACATGCTGAAGTTTGCTGAAGGTTGTGGAATT CCTGCAGCTCGTGTAACAAGAATAGCAGACCTTAGAGCTGCAATTCAGACAATGTTGGACACTCCAGGACCTTACTTGTTGGATGTGATTGTGCCTCATC AAGAGCATGTTCTGCCCATGATCCCTAGTGGTGGTTCGTTCAAAGACTTGATAACTGAGGGGGATGGGAGAAGCGAGTACTAG
AA sequence Show only first row Show all	>Lus10016751 pacid=23149165 polypeptide=Lus10016751 locus=Lus10016751.g ID=Lus10016751.BGIv1.0 annot-version=v1.0 MSRMAANSSAAIANTPKPSSATRSLIPLHRPSFSFSSLRPPSHCPSLHISCSSSFLPKVAAAATATNTASPLTVTSPSSRFAPDEPRKGADILVEALERQ GVTDVFAYPGGASMEIHQALTRSRTIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSIPLVAITGQVPRRMIGTDAFQETP IVEVTRSITKHNYLVLDVDDIPRVVKEAFHLATSGRPGPVLIDVPKDIQQQLAVPNWNSPMKLPGYLSRLPKNPCRSNLEVITRFISESKKPVLYVGGGC LNSSNELSRFVELTGIPVASTLMGLGSYPVGDDLSLQMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDPAEIGKNKQPHAS VCGDVKLALQGINEILETEEGKSKMDFSAWREELNEQKLKHPLTYKTFGEAIPPQHAIEVLDELTNGEAIISTGVGQHQMWAAQYYKYKRPRQWLTSGGL GAMGFGLPAAMGAAVANPGAVVVDIDGDGSFMMNVQELATIRVENLPVKMMLLNNQHLGMVVQWEDRFYKANRAHTYLGDPARESEIFPNMLKFAEGCGI PAARVTRIADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGSFKDLITEGDGRSEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	0	1
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	1.4	0.8967
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10024433 [exp]	1.7	0.8998
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10038795 [exp]	2.6	0.8698
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022445 [exp]	3.0	0.8887
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10028034 [exp]	3.2	0.8866
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	4.9	0.8635
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10028971 [exp]	5.6	0.8319
AT5G38640			NagB/RpiA/CoA transferase-like...		Lus10038944 [exp]	6.7	0.8614
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022446 [exp]	7.7	0.8455
AT4G22720			Actin-like ATPase superfamily ...		Lus10013054 [exp]	8.5	0.8241

Compare expression of checked genes

Lus10016751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.