Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23520 95 / 7e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G37100 94 / 1e-20 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G66950 92 / 9e-20 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G51920 84 / 2e-17 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G22980 77 / 3e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022447 [exp] 649 / 0 AT2G23520 96 / 1e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10037025 [exp] 379 / 5e-131 AT5G51920 86 / 3e-18 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10015781 [exp] 379 / 5e-129 AT1G27385 168 / 1e-49 unknown protein Lus10006342 [exp] 100 / 2e-22 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10002958 [exp] 94 / 2e-20 AT5G51920 396 / 5e-130 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10019650 [exp] 91 / 3e-19 AT4G37100 1186 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000751 [exp] 89 / 5e-19 AT4G37100 1141 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10038892 [exp] 89 / 9e-19 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022472 [exp] 86 / 7e-18 AT2G23520 1238 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G098200 [exp] 554 / 0 AT4G37100 95 / 4e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G097000 [exp] 551 / 0 AT4G37100 97 / 9e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G172100 [exp] 446 / 3e-157 AT5G51920 91 / 1e-19 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G056400 [exp] 203 / 2e-64 AT5G51920 59 / 1e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G111600 [exp] 93 / 2e-20 AT4G22980 431 / 2e-144 unknown protein Potri.003G120500 [exp] 92 / 5e-20 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G036100 [exp] 92 / 9e-20 AT2G23520 1236 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G131300 [exp] 91 / 2e-19 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G137900 [exp] 89 / 4e-19 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016752 pacid=23149100 polypeptide=Lus10016752 locus=Lus10016752.g ID=Lus10016752.BGIv1.0 annot-version=v1.0 ATGAGGAAGGGGAAATTTTCAAACAGAGGACCAGAGGTAAGCAATTGCAGTAACTGGATGAAAAAACTGAGTATTGAGATGCAAAGACATGTATGTAATT TTGGGCATGGAAATCAGGTGACAGGAGAAGGTCAACGCAACAAGTCCCTCTTTGCATCAATTGCAAAGCCTTCAACAGAGAACAACAGACCTAGCAGCAT GGTTATAAAGAAGGCGCACACAGTAATTCCAGCAGAGATTGTGGCAGAAGCGATATCGACTCTGAGAGGGCTGGATCTGAGGTGGTCTGGTCCAATAACT CCAACAGAAATGCAGTATGTGGAGCAGTATGTGGTAGCAAAGTACCCACAATATGCAGGCCTTGTTGGAGAGAAGATTGATCTCTCCACTCTTTGCATAG GGGAAGATCCTCCTCCTGCTGCTGCTGCTGCTGCTGACAAAGAAGATAAACGAAAATCATCGCCGCGGGTAAGTTTAAGGGATGCCTCATCCCCTTCCAA TGGGAGCAATCTCCCTGATTTGGATAGGACCCAGTTGGAGAACTCGAGGTTGCTTGATATCATGACAATGAAATCCTCATTTCCTGGGAGTTTCATCTCC ATACCTGAAATTCAGGCCCAGAACAAAGTCCTCAGGCACTGTGGCTTACCTGATGATGACTACCTTGTTCTTTTCACCCCAAGCTACAAAGATGCCATGA TGTTGATTGGAGAGAGCTACCCTTTCTACAGAGGTAATTTTTACATGTCCGTTCTTGGGGAAGACATGGATTGCATCAAGGAGTTTGCTACTTACAAGGA ATCAAAGGTCATATTGGCACCAGAGACTTGGTTGGATTTGAGGATCAAAGGGTCACAGCTCAGCCAGTATTTCAGGAGGAAGTGTAAGCACAGCCTCAAG GGCCTTTTCTCTTACCCAGCAGATGTCAATGGCACCCGTTATTCGATGCATTGGGTGTCGGAAGCTCATCGCAACTCGTGGCATGTTTTGCTAGATGCAA CCGCTTTCGTTGCAGGCAAGGATAAATTGAACCTCACGCTCCACCGCCCAGACTTTGTCTTGTGCACTCCTCCCGATAATACGCAATCTCAGCCTTGCAC CATTACCTGCCTTCTGGTTAGGAAGAAATCCTTCGACGCCACAACCAGTGCTGCTATTTCTTAG
AA sequence Show only first row Show all	>Lus10016752 pacid=23149100 polypeptide=Lus10016752 locus=Lus10016752.g ID=Lus10016752.BGIv1.0 annot-version=v1.0 MRKGKFSNRGPEVSNCSNWMKKLSIEMQRHVCNFGHGNQVTGEGQRNKSLFASIAKPSTENNRPSSMVIKKAHTVIPAEIVAEAISTLRGLDLRWSGPIT PTEMQYVEQYVVAKYPQYAGLVGEKIDLSTLCIGEDPPPAAAAAADKEDKRKSSPRVSLRDASSPSNGSNLPDLDRTQLENSRLLDIMTMKSSFPGSFIS IPEIQAQNKVLRHCGLPDDDYLVLFTPSYKDAMMLIGESYPFYRGNFYMSVLGEDMDCIKEFATYKESKVILAPETWLDLRIKGSQLSQYFRRKCKHSLK GLFSYPADVNGTRYSMHWVSEAHRNSWHVLLDATAFVAGKDKLNLTLHRPDFVLCTPPDNTQSQPCTITCLLVRKKSFDATTSAAIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10016752 [exp]	0	1
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10022447 [exp]	1.0	0.9653
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Lus10015503 [exp]	2.8	0.9145
AT1G11340			S-locus lectin protein kinase ...		Lus10025512 [exp]	6.0	0.9072
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023035 [exp]	8.5	0.9224
AT5G55860			Plant protein of unknown funct...		Lus10022531 [exp]	9.5	0.9226
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040311 [exp]	11.6	0.8592
AT4G27740			Yippee family putative zinc-bi...		Lus10023244 [exp]	13.4	0.8977
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Lus10006446 [exp]	15.0	0.9005
AT2G33580			Protein kinase superfamily pro...		Lus10019662 [exp]	16.3	0.8852
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	17.7	0.9080

Compare expression of checked genes

Lus10016752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.