Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79190 1236 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022448 [exp] 2355 / 0 AT1G79190 1267 / 0.0 ARM repeat superfamily protein (.1) Lus10001243 [exp] 687 / 0 AT1G79190 344 / 1e-107 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G067700 [exp] 1426 / 0 AT1G79190 1410 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016753 pacid=23149061 polypeptide=Lus10016753 locus=Lus10016753.g ID=Lus10016753.BGIv1.0 annot-version=v1.0 ATGGAAAACGATCGTATGCTATACCAAAGCAGCGTCTTCTCCCGGCTAAAACCTTGCTGTCTAGAGCTCCTTCAGCTTCTCCAAAACCCTAACAAAGTTT CTTCCTCTGCATTACCTTCACTGCTCCAACTCCTCCGCAGCTGTTCATCTAGTGATTTGCAGTCTTTCTTCGACTACACCTCGTTCCCGTTGCTGCTCCT ACTTGACGCTGCGGTCAGTTGCAGATCGTCCAATAAGGATGATCCTCAGAAGTATTCGGTGACCTTCAATCCGCAACAATCGTCTGATAGTGTTAGCGAC AAAGTGGCGGAAGGTGTGCTGCAGTGCTTGGAGGAGCTTCTCCAGAAATGTCGTTTTGGATCGGTCGACCAGATGGTTGTTGTGATGAAGAAATTGACTA ATGCCGCGTTGCTGTCTCCATCAGAGGCTTCAGAAGAATTTCGTGAGGGCGTAATCAAGTGTTTAAGGAAATTACTTATGGGCTTAAGTCCGTGTGCAGA TGAAACTTGTTCATGCAGACAAACGCATGGTATGCCAGCATTGTTGGAGAATGGGGAGCTCCACTGGTCTCTGTCCAAGCCTTTGAGTTATGATACAGAA GTGAAAGAGTGTGTGATTGCATTTCTCCAATCACATGCCGCTTCTGCCGCCGTCGGACACTTGCTGTCACTGCTACTCAAGGCAGCAGACAGTGAGGCTG CCCGAGGACATCGAGGCAGTGCAAGGCTCCGTGTTGAAGCCTTTTATACCTTACGTGTGCTTGTAGCCAAGGTCGGTTCTGCAGATGCATTGGCTTTCTT TTTACCTGGTGTTGTCAGCCAATTTTCAAAAGTTTTGCATGGCTCAAAAACTATGATGAGTGGAGCAGCTGGAAGCACAGATGCTACTGATCAAGCAATA AGAGCGTTGGCAGAGTATCTAATGATAGTGCTTGATGGTGTTTCCAATGTAAGCTCCATTATAACCGAGAATCTCCCAGCTGATGCAAGTTCGGACAGTA ATAGATCTGGCGAGTCCATATTGGATCAACTCCGTCACTTACCAGTCAGCAGTCAGGGGCATATGAAGAATATGGCTGATGAGTCAATAGTAGATCTGGA AAACTCAGTAACTCGTGCGTCTGAATACGAAATGAGTAGGGGCATGAAAAGAAGCAGGTACACAGGATCATTGCATGTTGAGCGAACAAGAGATTGGTTA AGGCAAACTTCAGCGCATGTGGTTAAATTGTTGAGTGCCACATTTCCACATATCTGTGTTCATCCTGTGAATAAGTTGAGATGGGGACTACTGGCTGCCA TCAAAGGATTAATATTAAGGTGCAGTTCTACTTTGAAGGAAAGCAGATCTATGCTACTAGAGTGCCTTTTGGTCTTGGTTGTTGATGACTCTGAAGATGT TGCTGGATCTGCCAAGGAGTTCCTTGAGTTCTTATTCTCATCGTGCGGAAAGCATTCAGTAAAAGCTGATATTGGTCCGATTTTTGCTAGGATAATTGAA AAGCTTCCAAAGGTAGCACTTGGTGGTGACGAATCAGTGGCTCTCTTCCATGCACAACAATTATTAGTTGTCATTTACTATTCTGGTCCTCTATTTGTTT TGGACCACCTCCAAAATCCGGTTACTGCAGCAAGACTCTTGGATGTGTTTTCCCTCTGTCTGAGTCCGAGTTCTGTATATGCTGGCGCTCTTGATAAGGA CACATTGACAAGGACATCATCCATTAGTTTTCTTCCATCTATTATGGAGTTGAGATGTGGTTCTCTTGCCCCTAGTTACCAGAATCTCAAAGATCAGTCT CTTGTAAATGTGTCCGATACAAGTTTTATTCATAGGAAACAAATTGAGTATCCTTTTGAAACTCTCGGGCACAGTTATGAACTTCCACGAATACCACCTT GGTTTGTCCATGTGGGTTATAAGAAGTTATATGACACACTGGCTGGAGTACTCAGACTAGTAGGCTTATCTTTTTACTCTCTCTTGTTGCTAGACCACCA TGAAGGGCATACGGTTGCTATTACAGATATACCACTAGGTCATATACGCAGATTAGTTTCTGAGGTTCACTCCAGAGATGCAAATGACGGCTGGCAGTAT TTGTATAATGGAACTTGGGCTGGAAAGTTAATACGTCAGGCGAGCACTTCGGCCTGCATTCTAAATGAGATGATATTTGGTGTATCTGATAAAGCAGTTG AAGGCATTACTATGTTGTTTCAAAATTCCAGGGAGAAGGGGGGAGAAGTTGTACTGTCTGATGTGAGAGGTTCTAGTGCTTGGCCGCCTTCACTTCAGAG CAGAGAAAGTATGGCTTCTGTTTGGAAGGCCTCACAACAAACTGTCAAAAAGAGTCACTTAATTGATTGTATTGGGAGAGTCTTACATGAGTATCTATCA TCTGAATTGTGGAATTTACCCATAGATCACAGGGATCTAGTGGGACAATGTGACGAGGAAGTTGAAGTTAACTTGCACTTATTCCAAGATGCAGCTGCCC TACAACAGGTTGCTATTGATGGAATTGGCATCTTTGCGACCTGCCTTGGAAATGATTTCTCCTCCAGTGGATTTCTTCACTCTACTCTTTATCTGCTGCT TGAGAGCCTCATATCCGCTGATATCCAAGTCAGAACTGCTTCTGATACTGTCCTGCATGTTCTTTCTGCTACCTGTGGCCATCCAACAGTTGGGCAGTTG GTCTTGGCCAATGCCGATTATGTTGTAGATTCAATATGTCGGCAATTACGTCACTTGGATCTTAACCCACAAGTCCCGAACGTGCTTGCTTCTATGCTTT CTTATATTGGAGTGACTAATAAAGTACTGCCCCTTTTGGAGGAAACGATGGGCTCTGTTTCAAGAGAACTAGAGATTCTTAGCAGACATCAGCACCCAGA GTTGACCACTCCTTTCCTAAAGGCCATAGCACAAATTTGCAAGGCATCACAATCTGAGGCTTCATCACTGCCATGTAATGCAGCATTGTATCTGAAGGAT GTGAAGTCCAAAGTCTCAAGGTTGGAGAAGAAAGTGAGAGCTCAATCCAATAAAGGTCCAACATCATCTTGTGATGACAATGTTGGTACTTGGCATGGAG AATCAGAACAATGGGAGGGTATAATCTTCAAGTTGAATGAATCTAAGAGGTACAGACGTACAGTTGGATCTATTGCTGCTTCCTGCTTATTATCCGCGAC TCCTCTACTTGGTTCAATGGAGCAAGCGGCATGCCTGGTGGCATTGGATATAGTTCAGGACGGCATTGCATCCCTGGCAAAAGTGGAAGAAGCTTATCAA TATGAGAAAGAAACCAAGGAAGTAGTCGAAGAAGTAGTGCAAGCATATTCAACTTATCAGCTTCAGGATACTATTGATGCGGCCGATGAAGGGATTGACG AGAACAGATTGCTTCCAGCAATGAATAAGATATGGCCATTCTTGATTTCTTGCGTTCGTAACAAAAATCCTGTGGCAGTTAGGAAATGCGCAACTGTGAT AGCCAATGTGGTGCAGACATGTGGAGGGGACTTCTTCACACGGCGGTTCCACACTGATGGTCCGTGCTTGTGGAAGCTTCTTTCCTCATCTCCGTTTCAG AGGAAGCCATTATTGAAAGATGAAAGAAGGACACTACGACTTCCTTATAGGAGCAATTTAGCCGCAAAGGAGGAGGAATCAATGGCTGAAACGTCCAACT TGAAGGTCCAGGCTGCGGTGCTGAAAATGGTTGCTGATTTGGCACGAAGCAAGAGGAGTTGTAGGGCATTGGAACTGGTACTGAAGAAGGTGAGCGGTCT AGTTGTTGGGATAGCTTGCAGCGGCGTCATTGGGCTTCATGATGCCTCGGCGAGTGCTCTTGATGCACTTGCGACTATGGACCCTGATCTGATATGGCTT TTAGTAGCCGATGTTTACTACTCATTGAAGGAGGAGAATGCCACATACCCTCCCAGCAGCTGCTCACGTTTGTTGGAAATATCTAGGCTTTTACCACCGC CTGTTTCACCCAAGGAGTACCTTTATGTGCAGTATGGAGGGCAAAGCTATGGTTTTGACATCAACGTAGCTTCAGTGGAGAAAGTATTCCGTTCATTGGC TTTTCCAGACCAACACAGGTTGTGA
AA sequence Show only first row Show all	>Lus10016753 pacid=23149061 polypeptide=Lus10016753 locus=Lus10016753.g ID=Lus10016753.BGIv1.0 annot-version=v1.0 MENDRMLYQSSVFSRLKPCCLELLQLLQNPNKVSSSALPSLLQLLRSCSSSDLQSFFDYTSFPLLLLLDAAVSCRSSNKDDPQKYSVTFNPQQSSDSVSD KVAEGVLQCLEELLQKCRFGSVDQMVVVMKKLTNAALLSPSEASEEFREGVIKCLRKLLMGLSPCADETCSCRQTHGMPALLENGELHWSLSKPLSYDTE VKECVIAFLQSHAASAAVGHLLSLLLKAADSEAARGHRGSARLRVEAFYTLRVLVAKVGSADALAFFLPGVVSQFSKVLHGSKTMMSGAAGSTDATDQAI RALAEYLMIVLDGVSNVSSIITENLPADASSDSNRSGESILDQLRHLPVSSQGHMKNMADESIVDLENSVTRASEYEMSRGMKRSRYTGSLHVERTRDWL RQTSAHVVKLLSATFPHICVHPVNKLRWGLLAAIKGLILRCSSTLKESRSMLLECLLVLVVDDSEDVAGSAKEFLEFLFSSCGKHSVKADIGPIFARIIE KLPKVALGGDESVALFHAQQLLVVIYYSGPLFVLDHLQNPVTAARLLDVFSLCLSPSSVYAGALDKDTLTRTSSISFLPSIMELRCGSLAPSYQNLKDQS LVNVSDTSFIHRKQIEYPFETLGHSYELPRIPPWFVHVGYKKLYDTLAGVLRLVGLSFYSLLLLDHHEGHTVAITDIPLGHIRRLVSEVHSRDANDGWQY LYNGTWAGKLIRQASTSACILNEMIFGVSDKAVEGITMLFQNSREKGGEVVLSDVRGSSAWPPSLQSRESMASVWKASQQTVKKSHLIDCIGRVLHEYLS SELWNLPIDHRDLVGQCDEEVEVNLHLFQDAAALQQVAIDGIGIFATCLGNDFSSSGFLHSTLYLLLESLISADIQVRTASDTVLHVLSATCGHPTVGQL VLANADYVVDSICRQLRHLDLNPQVPNVLASMLSYIGVTNKVLPLLEETMGSVSRELEILSRHQHPELTTPFLKAIAQICKASQSEASSLPCNAALYLKD VKSKVSRLEKKVRAQSNKGPTSSCDDNVGTWHGESEQWEGIIFKLNESKRYRRTVGSIAASCLLSATPLLGSMEQAACLVALDIVQDGIASLAKVEEAYQ YEKETKEVVEEVVQAYSTYQLQDTIDAADEGIDENRLLPAMNKIWPFLISCVRNKNPVAVRKCATVIANVVQTCGGDFFTRRFHTDGPCLWKLLSSSPFQ RKPLLKDERRTLRLPYRSNLAAKEEESMAETSNLKVQAAVLKMVADLARSKRSCRALELVLKKVSGLVVGIACSGVIGLHDASASALDALATMDPDLIWL LVADVYYSLKEENATYPPSSCSRLLEISRLLPPPVSPKEYLYVQYGGQSYGFDINVASVEKVFRSLAFPDQHRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79190			ARM repeat superfamily protein...		Lus10016753 [exp]	0	1
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	1.4	0.9232
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	2.0	0.9204
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10011536 [exp]	2.2	0.9169
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	3.7	0.9224
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006095 [exp]	5.3	0.9048
AT2G30120			unknown protein		Lus10026389 [exp]	7.6	0.8898
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001101 [exp]	8.0	0.9139
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	8.5	0.9164
AT1G79190			ARM repeat superfamily protein...		Lus10022448 [exp]	8.7	0.9044
AT1G04390			BTB/POZ domain-containing prot...		Lus10027380 [exp]	9.2	0.8907

Compare expression of checked genes

Lus10016753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.