Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48760 436 / 7e-150 DHHC-type zinc finger family protein (.1) AT3G26935 433 / 2e-149 DHHC-type zinc finger family protein (.1) AT5G41060 414 / 2e-142 DHHC-type zinc finger family protein (.1.2) AT4G24630 366 / 1e-123 DHHC-type zinc finger family protein (.1) AT5G50020 343 / 3e-114 DHHC-type zinc finger family protein (.1.2) AT3G56930 331 / 6e-109 DHHC-type zinc finger family protein (.1.2) AT5G05070 317 / 4e-104 DHHC-type zinc finger family protein (.1) AT2G40990 301 / 5e-98 DHHC-type zinc finger family protein (.1) AT3G56920 289 / 2e-94 DHHC-type zinc finger family protein (.1) AT3G04970 87 / 2e-18 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022451 [exp] 802 / 0 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 442 / 8e-153 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 440 / 4e-152 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 352 / 1e-117 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 341 / 1e-112 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 326 / 3e-107 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10027274 [exp] 319 / 4e-105 AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1) Lus10038990 [exp] 318 / 1e-104 AT5G05070 466 / 1e-163 DHHC-type zinc finger family protein (.1) Lus10033527 [exp] 310 / 2e-102 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G101900 [exp] 498 / 2e-174 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 491 / 7e-172 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 434 / 7e-150 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 434 / 2e-149 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 375 / 5e-127 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 372 / 2e-125 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 370 / 1e-124 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 355 / 4e-119 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 343 / 3e-113 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.006G027400 [exp] 335 / 3e-110 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10016754 pacid=23149133 polypeptide=Lus10016754 locus=Lus10016754.g ID=Lus10016754.BGIv1.0 annot-version=v1.0 ATGATGAGAGAGAGGGAGATGTATCCGGCTCCAATGCTTTCAAACGATCCTGCTGCTGCTGATGCTGCCAATTCCGTTGTTGATGATGATGATCATCATC ATCATGACAAGAATCGGCCTAGAGTTTATCAGGCTTGGAAAGGGAGTAATATATTTGTTTTTGGTGGTAGGCTTATATTCGGGCCAGATGCAAGATCACT AACGCTAACTATGTTACTGATTGGTGCACCTGCTGTTGTATTTTGCGTCTTCGTGGGACGCAAGTTGATGGATGACTTCCCTCATCATTCTGGAATATCA ATACTTGTCATCATTTCTGTATTGACTGCTCTGGACTTGCTGTTTCTGCTATTAACAGCAGGAAGAGATCCTGGTATAATACCTAGGAACTCTCGGCCAC CAGAGCCGGAAAGTAATCAAGGGGTTGAAACAGAAAGCACCCCACCTTTCCGGTTACCCCGAACTAAAGATGTTGTTGTGAATGGAATAGTTGTGAAAAC CAAGTACTGTGATACCTGCATGCTATATAGACCACCACGCTGTTCTCACTGCTCAATTTGCAACAACTGTGTTCAAAGATTCGACCATCACTGCCCTTGG GTTGGTCAGTGCATCGGATTGCGAAATTATCGCTTCTTCTACATGTTTGTGTTCACAACCACGCTTCTCTGCTTGTACGTACATGGGTTCAGTTGGGTGT ACATCAGGAGGATAGCAGACAGTGAACACATAACAATATGGAGAGCCATGACTAAAACCCCTGCCTCCATTGCTCTACTAGTTTACACCTTTGTTTCAGT TTGGTTCGTTGGTGGACTCACCGTGTTCCACACCTATCTCATCAGTAGAAACCAGTCTACGTATGAGAATTTCAGATACCGGTATGATGGTCTGCCAAAC CCATTTGATCGAGGGTTTGTCAACAACTTCAAGGAGGTATTCTTCTCAAGGATTCCCCCATCGAAGAACAACTTCAGGGAAAGAGTTCCAAAGGCTGTAC GACTACCCCCTAGACTTATCAGTATGGGCCGTGGTACTACGTATGCCATTATGGATATGGACAAGTCATCCGGAGACTTGGAGCTAGGAATGAAGCCAGG ATGGGACGTATCTGACAGAAGAGATGATTACCAGGGACATGGGAGAGGTGATCAAAGTCTTGTTTACAGCGAGAACGAGAACGGTGATGAATCATTGAAT GGTGACGTTTCATCTCCAGAACCTAGACAAGGTATGGATGTGCATAACCCATTGTCGTGTTCTAGGAGGTCTAGTTTGGGAAGAACAAGTGGGAGATTAG ACTTCTCATCCCCAGATGGAGCTGGAGTTGGGGAACCACAGAAGCAACTCGCTGATGAGAATGACAATGATGATAAGTTGACACAGGAGACTGAACATCC TCAGAAAGGAAAAGATAGAGATGGGTAA
AA sequence Show only first row Show all	>Lus10016754 pacid=23149133 polypeptide=Lus10016754 locus=Lus10016754.g ID=Lus10016754.BGIv1.0 annot-version=v1.0 MMREREMYPAPMLSNDPAAADAANSVVDDDDHHHHDKNRPRVYQAWKGSNIFVFGGRLIFGPDARSLTLTMLLIGAPAVVFCVFVGRKLMDDFPHHSGIS ILVIISVLTALDLLFLLLTAGRDPGIIPRNSRPPEPESNQGVETESTPPFRLPRTKDVVVNGIVVKTKYCDTCMLYRPPRCSHCSICNNCVQRFDHHCPW VGQCIGLRNYRFFYMFVFTTTLLCLYVHGFSWVYIRRIADSEHITIWRAMTKTPASIALLVYTFVSVWFVGGLTVFHTYLISRNQSTYENFRYRYDGLPN PFDRGFVNNFKEVFFSRIPPSKNNFRERVPKAVRLPPRLISMGRGTTYAIMDMDKSSGDLELGMKPGWDVSDRRDDYQGHGRGDQSLVYSENENGDESLN GDVSSPEPRQGMDVHNPLSCSRRSSLGRTSGRLDFSSPDGAGVGEPQKQLADENDNDDKLTQETEHPQKGKDRDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	0	1
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	1.0	0.9685
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	1.4	0.9647
AT3G59660			C2 domain-containing protein /...		Lus10025600 [exp]	1.7	0.9600
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10040044 [exp]	3.9	0.9529
AT4G26060			Ribosomal protein L18ae family...		Lus10027625 [exp]	5.7	0.9533
AT3G26020			Protein phosphatase 2A regulat...		Lus10037057 [exp]	6.3	0.9353
AT1G15860			Domain of unknown function (DU...		Lus10039198 [exp]	6.6	0.9347
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10014763 [exp]	6.9	0.9442
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10010465 [exp]	7.3	0.9419
AT5G55860			Plant protein of unknown funct...		Lus10022531 [exp]	8.8	0.9449

Compare expression of checked genes

Lus10016754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.