Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48540 259 / 2e-88 Cytidine/deoxycytidylate deaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022452 [exp] 331 / 4e-115 AT3G48540 313 / 6e-108 Cytidine/deoxycytidylate deaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G096400 [exp] 292 / 4e-101 AT3G48540 365 / 7e-130 Cytidine/deoxycytidylate deaminase family protein (.1) Potri.012G097800 [exp] 231 / 2e-77 AT3G48540 306 / 1e-106 Cytidine/deoxycytidylate deaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence Show only first row Show all	>Lus10016755 pacid=23149159 polypeptide=Lus10016755 locus=Lus10016755.g ID=Lus10016755.BGIv1.0 annot-version=v1.0 ATGAACCATCGCGAGGTCGTTCTCGTCTCAACGGCCACTGTGCTCGGTGCTCTAGCGTCTACCGTAGCATTTCACTTCTTCTCCAGCTTGAAGCCGAAAC TCTCCGCGTCCCAATCATCTTCCGATGGAGAAGCTGCAGAGAAATGTCTATCTCAGAGTCCCTTCGATCCTTCAAAGCGAAAGCGGTATCTGTCGTGGGA TGATTATTTCATGGCAATCGCTTTTCTGTCTGCTGAACGCTCCAAAGATCCAAACAGGCAGGCATCGGTTACAATGGATTTCCCAGAGGATGTTCAGATG ACAAGCTCCCATGGGCAAAGGTTAAAATCCAAGAATGGCGACCCTTTGGAGACAAAGTACCCCTATGTTTGTCATGCGGAAGTCAATGCTGTCCTGAACA CAAATCATGCTTCTGCAGCAGGGCAACGCCTTTATGTGACTATGTATCCATGCAATGAATGTGCCAAGATAATTATCCAGTCGGGTGTTTCTGAGGTGAT ATATTCCCTAGAGAAGAACATGAGCAGTTCAGATGTTGCATACGTTGCCTCCCGTAAACTGTTGTCACTGGCTGGTGTTAAAGTGAGGAAACACCAACCA CAGACGGATCGGATATTCATAAAGTTTCAAGATCCTCTATGA
AA sequence Show only first row Show all	>Lus10016755 pacid=23149159 polypeptide=Lus10016755 locus=Lus10016755.g ID=Lus10016755.BGIv1.0 annot-version=v1.0 MNHREVVLVSTATVLGALASTVAFHFFSSLKPKLSASQSSSDGEAAEKCLSQSPFDPSKRKRYLSWDDYFMAIAFLSAERSKDPNRQASVTMDFPEDVQM TSSHGQRLKSKNGDPLETKYPYVCHAEVNAVLNTNHASAAGQRLYVTMYPCNECAKIIIQSGVSEVIYSLEKNMSSSDVAYVASRKLLSLAGVKVRKHQP QTDRIFIKFQDPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48540			Cytidine/deoxycytidylate deami...		Lus10016755 [exp]	0	1
AT3G05480		ATRAD9	cell cycle checkpoint control ...		Lus10029894 [exp]	7.7	0.8112
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10042835 [exp]	15.2	0.8083
					Lus10001722 [exp]	20.9	0.7564
AT1G75680		ATGH9B7	glycosyl hydrolase 9B7 (.1)		Lus10025965 [exp]	23.2	0.6515
					Lus10003766 [exp]	23.7	0.6801
AT4G01310			Ribosomal L5P family protein (...		Lus10033169 [exp]	28.7	0.7006
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10017351 [exp]	33.5	0.7155
AT4G08630			unknown protein		Lus10001720 [exp]	35.5	0.7345
					Lus10029057 [exp]	47.5	0.7243
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10017925 [exp]	61.3	0.6935

Compare expression of checked genes

Lus10016755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.