Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63400 416 / 2e-149 ADK1 adenylate kinase 1 (.1.2) AT5G50370 402 / 9e-144 Adenylate kinase family protein (.1) AT5G35170 140 / 2e-38 adenylate kinase family protein (.1.2) AT5G47840 131 / 8e-37 AMK2 adenosine monophosphate kinase (.1) AT2G37250 106 / 2e-27 ADK, ATPADK1 adenosine kinase (.1) AT2G39270 101 / 2e-25 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G26667 91 / 3e-22 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G60180 87 / 9e-21 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G25280 83 / 8e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01820 49 / 7e-07 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022453 [exp] 486 / 5e-177 AT5G63400 411 / 2e-147 adenylate kinase 1 (.1.2) Lus10037995 [exp] 122 / 3e-34 AT5G47840 315 / 9e-110 adenosine monophosphate kinase (.1) Lus10009478 [exp] 121 / 3e-34 AT5G47840 293 / 1e-101 adenosine monophosphate kinase (.1) Lus10036326 [exp] 123 / 2e-32 AT5G35170 658 / 0.0 adenylate kinase family protein (.1.2) Lus10001984 [exp] 110 / 9e-29 AT2G37250 391 / 4e-138 adenosine kinase (.1) Lus10009228 [exp] 107 / 6e-28 AT5G47840 296 / 3e-101 adenosine monophosphate kinase (.1) Lus10040358 [exp] 108 / 7e-28 AT2G37250 405 / 1e-143 adenosine kinase (.1) Lus10023476 [exp] 107 / 1e-27 AT2G37250 407 / 2e-144 adenosine kinase (.1) Lus10030296 [exp] 107 / 2e-27 AT2G37250 395 / 1e-139 adenosine kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095300 [exp] 462 / 2e-167 AT5G63400 419 / 1e-150 adenylate kinase 1 (.1.2) Potri.015G092800 [exp] 449 / 2e-162 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2) Potri.013G103400 [exp] 144 / 7e-42 AT5G47840 347 / 1e-120 adenosine monophosphate kinase (.1) Potri.019G078200 [exp] 141 / 1e-40 AT5G47840 332 / 8e-115 adenosine monophosphate kinase (.1) Potri.018G113400 [exp] 134 / 4e-36 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.008G046100 [exp] 116 / 3e-31 AT2G37250 377 / 1e-132 adenosine kinase (.1) Potri.010G215300 [exp] 104 / 2e-26 AT2G37250 382 / 2e-134 adenosine kinase (.1) Potri.014G104700 [exp] 93 / 8e-23 AT5G26667 275 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.002G134600 [exp] 83 / 3e-19 AT5G26667 345 / 1e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G043300 [exp] 82 / 1e-18 AT5G26667 358 / 2e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00406 [flax] [poplar] ADK Adenylate kinase CL0023 [flax] [poplar] PF05191 [flax] [poplar] ADK_lid Adenylate kinase, active site lid
Representative CDS sequence Show only first row Show all	>Lus10016757 pacid=23149031 polypeptide=Lus10016757 locus=Lus10016757.g ID=Lus10016757.BGIv1.0 annot-version=v1.0 ATGGCGAGCTCTTCGGCGGCGACTTTGGAAGATGTTCCCTCCGTTGATCTCATGACCGAGCTCCTCCGCCGCATGAAGTGTGCCACCAAACCTGACAAGC GCCTCATACTTATCGGTCCTCCTGGATCAGGAAAAGGTACTCAATCACCGATCATTAAGGATGAGTTCTGCTTGTGCCACTTGGCTACAGGGGATATGTT GAGAGCTGCTGTTGCAAGCAAAACTCCTCTTGGAATCAAGGCTAAGGAGGCAATGGAAAAGGGACAACTTGTTTCTGATGATTTGGTAGTTGGAATTATT GATGAAGCGATCAAGAAGCCCTCTTGTCAAAAAGGTTTCATTCTTGACGGGTTTCCACGGACTGTGGTCCAGGCGCAGAAGCTTGATGAGATGCTTGAGA AGCAGGGAGTCAAAGTTGATAAGGTGCTGAATTTTGCCATTGATGATTCTATTTTGGAAGAGAGAATTACTGGTCGCTGGATCCACCCTTCAAGTGGTAG AACCTATCACACCAAATTTGCACCTCCCAAGAACCCCGGTGTTGATGATGTAACTGGAGAAGCATTGATCCAGCGGAAGGATGACACAGCTGCGGTCTTA AAGTCTAGGCTGGAGGCATTCCATAAGCAGACTGAACCGGTGATTAACTATTACAAGCAAAAGGGTGCTGTTGCGGATCTGCACGCAGAGAAAGCTCCTA AAGAGGTCACAACTGAGGTTGAGAAAGCGCTTTCCTCCTGA
AA sequence Show only first row Show all	>Lus10016757 pacid=23149031 polypeptide=Lus10016757 locus=Lus10016757.g ID=Lus10016757.BGIv1.0 annot-version=v1.0 MASSSAATLEDVPSVDLMTELLRRMKCATKPDKRLILIGPPGSGKGTQSPIIKDEFCLCHLATGDMLRAAVASKTPLGIKAKEAMEKGQLVSDDLVVGII DEAIKKPSCQKGFILDGFPRTVVQAQKLDEMLEKQGVKVDKVLNFAIDDSILEERITGRWIHPSSGRTYHTKFAPPKNPGVDDVTGEALIQRKDDTAAVL KSRLEAFHKQTEPVINYYKQKGAVADLHAEKAPKEVTTEVEKALSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Lus10016757 [exp]	0	1
AT3G18420			Protein prenylyltransferase su...		Lus10031923 [exp]	1.7	0.9000
AT3G22070			proline-rich family protein (....		Lus10039700 [exp]	5.8	0.8848
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10038318 [exp]	10.4	0.8826
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	11.9	0.8837
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10016645 [exp]	14.4	0.8702
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022560 [exp]	14.7	0.8784
AT2G32380			Transmembrane protein 97, pred...		Lus10027174 [exp]	19.5	0.8790
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10042110 [exp]	21.8	0.8715
AT1G08280			Glycosyltransferase family 29 ...		Lus10019538 [exp]	22.7	0.8611
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10021666 [exp]	23.8	0.7632

Compare expression of checked genes

Lus10016757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.