Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63420 1188 / 0 Trihelix EMB2746 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) AT2G38250 52 / 1e-06 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 51 / 2e-06 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT1G76880 50 / 4e-06 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G01380 49 / 7e-06 Trihelix Homeodomain-like superfamily protein (.1) AT2G01730 50 / 9e-06 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) AT1G76890 49 / 2e-05 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G33240 49 / 2e-05 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT3G25990 47 / 3e-05 Trihelix Homeodomain-like superfamily protein (.1) AT2G33550 46 / 6e-05 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022454 [exp] 1662 / 0 AT5G63420 1223 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10020873 [exp] 53 / 9e-07 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10033504 [exp] 52 / 1e-06 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10036978 [exp] 52 / 2e-06 AT1G13450 523 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Lus10004806 [exp] 51 / 2e-06 AT5G01380 239 / 5e-77 Homeodomain-like superfamily protein (.1) Lus10015824 [exp] 51 / 3e-06 AT1G13450 533 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Lus10037338 [exp] 50 / 8e-06 AT2G01730 732 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10035763 [exp] 49 / 1e-05 AT2G01730 755 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10042806 [exp] 49 / 3e-05 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095800 [exp] 1261 / 0 AT5G63420 1300 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Potri.015G093600 [exp] 1231 / 0 AT5G63420 1230 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Potri.001G129900 [exp] 57 / 3e-08 AT2G38250 115 / 4e-30 Homeodomain-like superfamily protein (.1) Potri.018G049301 [exp] 55 / 2e-07 AT1G76890 158 / 2e-42 Duplicated homeodomain-like superfamily protein (.2) Potri.010G106200 [exp] 54 / 5e-07 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Potri.010G055000 [exp] 53 / 7e-07 AT1G13450 518 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.001G309100 [exp] 53 / 8e-07 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.018G049700 [exp] 52 / 1e-06 AT1G76890 148 / 5e-38 Duplicated homeodomain-like superfamily protein (.2) Potri.001G454500 [exp] 52 / 1e-06 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.018G049500 [exp] 51 / 2e-06 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily CL0398 [flax] [poplar] RMMBL_DRMBL PF07521 [flax] [poplar] RMMBL Zn-dependent metallo-hydrolase RNA specificity domain
Representative CDS sequence Show only first row Show all	>Lus10016758 pacid=23149093 polypeptide=Lus10016758 locus=Lus10016758.g ID=Lus10016758.BGIv1.0 annot-version=v1.0 ATGTCCACTTTTAGTCTCACTGCTCCCTCGCTCTGCCCTTATTACCGCCCTGGTCTTGCCAAGTTCTCTGTTTCTTGCTGTACTGGTTCCCCGACCAAGA TAGGAAGCAGGCGGGTATCAAAAGCACCACCACGTAAAAGACCAAGTAGAAGAATGGAAGGGGCAGGGAAAAGTATGGAGGATTCTGTTAAACGCAAAAT GGAACAGTTCTATGAAGGAACTGATGGCCCACCTCTACGTATTGTTCCAATTGGTGGACTTGGTGAGATTGGAATGAATTGCATGCTGGTCGGGAATTAC GATCGCTATATTCTAATTGACGCTGGTGTTATGTTTCCTGACGACGAAGATCTCGGAGTTCAAAAGATTTTGCCAGACACCACGTTTATCAAAAGATGGA GTCACAAAATTGAGGCAGTTGTTATAACTCATGGCCATGAAGATCACATCGGTGCGTTGCCATGGGTGATCCCGGCTTTGGATGCAAATACCCCGATATT CGCTTCATCGTTTACAATGGAGCTGATAAAAAAACGTCTGAAGGAGCATGGTTTCTTTCTTCCTTCCAGACTAAAAGTTTTCAGAACAAGGAAGAGATTC ACTGCTGGGCCTTTTGAAATAGAGCCAATCACAGTGACCCACTCGATTCCTGATTGTAGTGGTCTCATTCTTCGTTGTTCTGATGGTATAATCCTTCATA CTGGTGATTGGAAGATAGATGAATCTCCATTGGATGGCAAACCATTTGATCGTGAAGCTCTAGAAGAACTCTCAAAGGAAGGAGTGACATTGATGATGAG CGATTCAACAAATGTGTTATCGCCAGGAAGGACAACTAGTGAAACTGTTGTAGCGGATTCACTGTTGAGACATATTTCTGCTGCTAAAGGAAGGGTTATT ACTACTCAATTTGCATCAAATATATGGCGGCTAGGAAGTGTGAAAGCTGCTGCTGATTTGACAGGAAGAAAACTTGTTTTTGTTGGCATGTCCTTAAGGA CATACTTGGATGCTGCTTGGAAGGATGGAAAAGCACCTATTGACCCTGCCACTCTGGTGAAAGCAGAAGATATTGATCAATACGCTCCTAAAGATTTATT GATTGTGACAACTGGGTCACAAGCAGAACCTCGAGCTGCACTAAATCTTGCATCGTATGGAACTAGCTATGCTTTCAAACTGAAAAAGGAAGATATAATT CTTTATTCAGCTAAGGTTATCCCTGGTAATGAATCAAGAGTAATGAAAATGATGAATCGCATAACAGAAATTGGGTCAACCATAGTAATGGGTAGAAACG AGCAACTGCACACTTCTGGCCATGGGTATCGTGGAGAGCTGGAGGAGGTACTTAAAATCGTGAAACCGCAGCACTTTCTCCCTATACATGGAGAACTTTT GTTCTTGAAAGAACATGAATTGCTTGGAAAGTCAACTGGAGTGCATCATACTACTGTCATTAAGAACGGGGAGATGCTCGGCGTATCACATTTAAGGAAT AGACGAGTGTTATCTAATGGTTTCATTTCTCTTGGAAAGGAGAATTTACAGCTAATGTATAGTGATGGTGATAAAGCATTTGGCACAGCAACTGAGCTTT GCATCGAGGAGAGGCTAAGAATTGCAACCGATGGAATCATTGTGGTCAGCATGGAAATCTTGCGACCTCAGGGCGTAGATAGTGTGAGCGAAAATAACAT AAAAGGAAGAATAAGAATCACAACACGGTGCTTGTGGTTGGACAAGGGGAAGCTTTTAGATGCACTCCACAAAGCTGCCCACGCCGCCCTTTCAAGTTGC CCTTTAAACTGTCCTTTAGCGCACATGGAAAGAACAGTAGCCGAGGTATTAAGGAAGATGGTGAGGAAGTATAGTGGCAAAAGGCCTGAGATGATTGTTA TTGCCATGGAAAACCCAGCAGGGGTTCTTTCTGAAGAACTGTCTGCAAAGCTTGCTGGCAAATCAGAAATGGGGTTTGGGATATCAGCATTGAGAAAAGT AATCGACAAACATCCTGAAAGAAAGAACAAGCCACAAATTGACGAAAATGGATATGGTTACATTGAGGATGCACCACTGGAGGATTCTGAAGGAGAGAAT GCAGTTGAGGAAGATAACAGTAGTTCAAGTGAGAGGTTGGATGGAAGGAGTGTGGAGGATGATAATTTTTGGCGTTCAATGATGTCATCACTGCCTGGTG ACCCTTCAGAAGAAGAAGCTAATGTGAGAGGTGGTGGTAATGACAGTAGTGAAGATAATGACGCAGAGAAAACTAGGCAGAAATCTGGTAAGCGTAATAA GTGGAAACCGGAGGAGATCAAGAAGCTAATTAAAATGAGAGGGATTTTGCATAGCAGGTTTATCAGTGTAAAGGGAGGAAGGATGGCCCTCTGGGAAGAT ATATCTAGTAGCTTGATGGAGGAAGGGATCGAACGCACTCCAGGACAATGCAAATCACTGTGGGCATCTCTGGTACAAAAATACGAGGAAAGCAAAAACG GGCCTGAGAGTGGAAAAGAATGGCAATATTTTGAACAAGTGAAGAGCATTCTATCTGATCATGAGCCTGAGCCAACTGCAGCGGCTAAATGA
AA sequence Show only first row Show all	>Lus10016758 pacid=23149093 polypeptide=Lus10016758 locus=Lus10016758.g ID=Lus10016758.BGIv1.0 annot-version=v1.0 MSTFSLTAPSLCPYYRPGLAKFSVSCCTGSPTKIGSRRVSKAPPRKRPSRRMEGAGKSMEDSVKRKMEQFYEGTDGPPLRIVPIGGLGEIGMNCMLVGNY DRYILIDAGVMFPDDEDLGVQKILPDTTFIKRWSHKIEAVVITHGHEDHIGALPWVIPALDANTPIFASSFTMELIKKRLKEHGFFLPSRLKVFRTRKRF TAGPFEIEPITVTHSIPDCSGLILRCSDGIILHTGDWKIDESPLDGKPFDREALEELSKEGVTLMMSDSTNVLSPGRTTSETVVADSLLRHISAAKGRVI TTQFASNIWRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPATLVKAEDIDQYAPKDLLIVTTGSQAEPRAALNLASYGTSYAFKLKKEDII LYSAKVIPGNESRVMKMMNRITEIGSTIVMGRNEQLHTSGHGYRGELEEVLKIVKPQHFLPIHGELLFLKEHELLGKSTGVHHTTVIKNGEMLGVSHLRN RRVLSNGFISLGKENLQLMYSDGDKAFGTATELCIEERLRIATDGIIVVSMEILRPQGVDSVSENNIKGRIRITTRCLWLDKGKLLDALHKAAHAALSSC PLNCPLAHMERTVAEVLRKMVRKYSGKRPEMIVIAMENPAGVLSEELSAKLAGKSEMGFGISALRKVIDKHPERKNKPQIDENGYGYIEDAPLEDSEGEN AVEEDNSSSSERLDGRSVEDDNFWRSMMSSLPGDPSEEEANVRGGGNDSSEDNDAEKTRQKSGKRNKWKPEEIKKLIKMRGILHSRFISVKGGRMALWED ISSSLMEEGIERTPGQCKSLWASLVQKYEESKNGPESGKEWQYFEQVKSILSDHEPEPTAAAK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Lus10016758 [exp]	0	1
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Lus10022454 [exp]	1.0	0.9684
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10012527 [exp]	3.5	0.9022
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10035926 [exp]	4.0	0.8737
AT4G35910			Adenine nucleotide alpha hydro...		Lus10042060 [exp]	4.9	0.8835
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10041566 [exp]	10.6	0.8916
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10014222 [exp]	11.0	0.8348
AT5G14260			Rubisco methyltransferase fami...		Lus10022333 [exp]	13.4	0.8874
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	15.0	0.8997
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10023319 [exp]	16.9	0.8440
AT4G34730			ribosome-binding factor A fami...		Lus10018065 [exp]	18.7	0.8560

Compare expression of checked genes

Lus10016758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.