Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49180 205 / 7e-61 RID3 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 71 / 4e-13 MAC3B MOS4-associated complex 3B (.1.2.3) AT1G04510 70 / 1e-12 MAC3A MOS4-associated complex 3A (.1.2) AT1G15440 66 / 2e-11 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT1G11160 63 / 4e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 62 / 5e-10 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G58230 59 / 5e-09 binding (.1) AT5G23430 57 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G48630 56 / 2e-08 RACK1B_AT receptor for activated C kinase 1B (.1) AT1G18080 56 / 2e-08 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022454 [exp] 833 / 0 AT5G63420 1223 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10013988 [exp] 209 / 1e-59 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10015407 [exp] 112 / 1e-27 AT3G49180 169 / 3e-49 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10025732 [exp] 87 / 1e-18 AT3G49180 130 / 7e-34 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10034114 [exp] 77 / 2e-14 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10014477 [exp] 74 / 1e-13 AT2G33340 784 / 0.0 MOS4-associated complex 3B (.1.2.3) Lus10043473 [exp] 74 / 2e-13 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10023728 [exp] 72 / 5e-13 AT2G33340 786 / 0.0 MOS4-associated complex 3B (.1.2.3) Lus10011224 [exp] 65 / 1e-10 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G093300 [exp] 503 / 2e-176 AT3G49180 226 / 8e-69 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G027200 [exp] 206 / 3e-61 AT3G49180 503 / 2e-177 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G384200 [exp] 127 / 4e-32 AT3G49180 125 / 7e-32 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G173500 [exp] 77 / 1e-14 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.003G060500 [exp] 77 / 1e-14 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.008G171600 [exp] 69 / 4e-12 AT2G33340 830 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.010G066000 [exp] 67 / 1e-11 AT2G33340 819 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.011G045500 [exp] 63 / 2e-10 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G052700 [exp] 60 / 1e-09 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 59 / 2e-09 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10016759 pacid=23149088 polypeptide=Lus10016759 locus=Lus10016759.g ID=Lus10016759.BGIv1.0 annot-version=v1.0 ATGATGGATCCGAAAGGATTCAACTCGAAGGAAGGCGAGGCCTTAGTATTGTGCGGAGACAGGAATATGGGAACCGGAATCGAGCTGTGGGATTTAGAGT CAGGAGATCGTATTCTTCACATCCCAACTTGCGCTTCTCCTCCTCACGGACTATCCTGCTTGAGATCCCAGGTTCTCTTTGCTTCTCAGGCCAATAAGCA TGGCTCTGTTGGCGGTGGAGCCATTTTCTCTTGGCATTTAAACAAGCCTCACTCGCCGATGAGGAGCTACCAGATTGAAGCCATTGGGCCACTTGCTGCC ACCTTCAACGGGATGTATCTGGCAGCTGGTGCTCTTTCAGGAAATGCTTATATATGGGAGGTGACTAGTGGGAGATTGCTCAAAACTTGGAGAGCCCATC ATAGATCTTTCAAGTGCATTGCTTTCTCTAATAATGATTCCCTTGTTATTGTTGGATCCGATGATGGGACTATTCTTGCGTGGCCATTAATCAGTTTGCT GGATGTTGAAGATGTTGGAAGCTCATCGTCATTGCTACACTTTTCGATGGAGCATAAGTCCTCTATAACATCGCTATTAATGCCGCCTGGCAGTACAAAC TCCTTGTTTATATCTACTTCTCTTGATGCCACCTCCAAGGTGTGGGAGCTCGTCTCTGGTAGGTTGATACAAACATTCGAGTATCCAACAGGAATAGCTG CAGCTACCCTGCATCCAGATGAGCCACTTCTGTTCACTGGTAGCAGTATAGATGGAAGAATATTTGTTAATGTTGTTGATCTTGGACTGATACATGATCA TGAACCTATTACTGGGGTACAAGGACAGATGGGTGTGCTAAAAGGACACAATGGGCCAATAACAGCATTAACGTTTAGCAGATATGGCCTCATATCTGCA TCTGAAGATTGCACTGTCTGCCTTTGGGATGTAGGTTCTCAGCAAATTGTATGGAGAATCAACCATAAAAAAGGACCTGTTACGAATCTCGTACTAGTTC CACATTCTTCAATGCTTTCCACTCCAAATCATCACCAAAGAGTTTCTAGTCGGTTCTGCGTTTCTTTGCTCGACAAGTGCCATCGGCAGGCCGATCCATC TAAAGGAGTGATTGCTTTTCTCCCATCATATTCTTTACCTATTGATGGCGGACAGAGAGAGGAAACACCAGAATCCATGGAAATGAAGATAGGGATGAGC ACAGGGAAGCGGATGTGGGCTTTGCAAATGACGAAGCATGTTATGAAAATGAACAAGCATTTACAGAGTCGACTGCTAGACTTGATGCAAAACAGATTAC TGTTGGCTTGCAACAACACTGATGCCCGTAGGATAAATAATAATAATAAGAAGAAGAAGACGAATAAAACACAGCTGAAGACTCGAAGTAGATGTTCATC TGAAGAGGAGCTTTCCTTCCAAGTATGA
AA sequence Show only first row Show all	>Lus10016759 pacid=23149088 polypeptide=Lus10016759 locus=Lus10016759.g ID=Lus10016759.BGIv1.0 annot-version=v1.0 MMDPKGFNSKEGEALVLCGDRNMGTGIELWDLESGDRILHIPTCASPPHGLSCLRSQVLFASQANKHGSVGGGAIFSWHLNKPHSPMRSYQIEAIGPLAA TFNGMYLAAGALSGNAYIWEVTSGRLLKTWRAHHRSFKCIAFSNNDSLVIVGSDDGTILAWPLISLLDVEDVGSSSSLLHFSMEHKSSITSLLMPPGSTN SLFISTSLDATSKVWELVSGRLIQTFEYPTGIAAATLHPDEPLLFTGSSIDGRIFVNVVDLGLIHDHEPITGVQGQMGVLKGHNGPITALTFSRYGLISA SEDCTVCLWDVGSQQIVWRINHKKGPVTNLVLVPHSSMLSTPNHHQRVSSRFCVSLLDKCHRQADPSKGVIAFLPSYSLPIDGGQREETPESMEMKIGMS TGKRMWALQMTKHVMKMNKHLQSRLLDLMQNRLLLACNNTDARRINNNNKKKKTNKTQLKTRSRCSSEEELSFQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10016759 [exp]	0	1
AT4G20930			6-phosphogluconate dehydrogena...		Lus10023258 [exp]	6.9	0.9492
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	7.7	0.9553
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	8.0	0.9546
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Lus10031941 [exp]	8.1	0.9191
AT1G03620			ELMO/CED-12 family protein (.1...		Lus10039805 [exp]	9.5	0.9388
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10004222 [exp]	9.7	0.9520
AT1G09195			unknown protein		Lus10031400 [exp]	10.2	0.9342
AT1G56140			Leucine-rich repeat transmembr...		Lus10031401 [exp]	11.4	0.9534
AT5G63970			Copine (Calcium-dependent phos...		Lus10020885 [exp]	12.0	0.9382
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10018348 [exp]	12.3	0.9524

Compare expression of checked genes

Lus10016759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.