Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63440 439 / 8e-159 Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3) AT1G49170 69 / 5e-15 Protein of unknown function (DUF167) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022455 [exp] 478 / 5e-174 AT5G63440 439 / 9e-159 Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3) Lus10033521 [exp] 47 / 1e-06 AT1G49170 151 / 3e-48 Protein of unknown function (DUF167) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G096500 [exp] 447 / 4e-162 AT5G63440 442 / 5e-160 Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3) Potri.015G094300 [exp] 437 / 4e-158 AT5G63440 429 / 5e-155 Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3) Potri.005G056500 [exp] 62 / 5e-12 AT1G49170 172 / 1e-56 Protein of unknown function (DUF167) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02594 [flax] [poplar] DUF167 Uncharacterised ACR, YggU family COG1872
Representative CDS sequence Show only first row Show all	>Lus10016760 pacid=23149102 polypeptide=Lus10016760 locus=Lus10016760.g ID=Lus10016760.BGIv1.0 annot-version=v1.0 ATGCCGAAACGAACAACCCACACTTACTCAAGCGAGGACGCAGTTCCCGACGGTCCTGATTCCGATCTCTTCGTCTATTATTGCAAGCACTGCAGTTCCC ACGTCCTTATTACTGATACCCAGTTGCAGAAAATGCCCAAAAGGAAGACTGACAAATCCTATGTCTTGGAAAAGAAGAAGCATCTCGCCAGGCTCAACAT CAGTGATGCTGGAAAGGTTCTCTTGAAAAGGGGCGAGGGGAAATTGGAGAAGCAATTTCGTATGAACTGTATTGGCTGTGGCCTGTTTGTCTGCTACCGT GCTGAAGAAGATGTAGAAAATGCATCCTTTATATATGTAGTTGATGGCGCTCTCAGCACAGTTGCTGCTGAAACTAACCCTCAGGATGCTCCTGTGCCAC CCTGCATATCACAAGTGGAAAGAGGACTTGTCCAGGTGGCCATCGAGGTGGAGGACCGTGCACAGCGATCAGCAATAACAAGAGTTAATGCTGACGATGT ACGTGTATCAGTGGCAGCACCTGCAACCCGTGGAGAAGCTAACAATGAACTTCTAGAATTCATGGGCAAAGTCTTGGGTCTGAGACTAAGCCAGATGACT CTACAGAGAGGATGGAATAATAAATCCAAGCTCTTAGTAGTTGAGGATTTGTCTGCTAGACAGGTGTACGAGAAACTTTTGGAAGCAGTACAACCTTAA
AA sequence Show only first row Show all	>Lus10016760 pacid=23149102 polypeptide=Lus10016760 locus=Lus10016760.g ID=Lus10016760.BGIv1.0 annot-version=v1.0 MPKRTTHTYSSEDAVPDGPDSDLFVYYCKHCSSHVLITDTQLQKMPKRKTDKSYVLEKKKHLARLNISDAGKVLLKRGEGKLEKQFRMNCIGCGLFVCYR AEEDVENASFIYVVDGALSTVAAETNPQDAPVPPCISQVERGLVQVAIEVEDRAQRSAITRVNADDVRVSVAAPATRGEANNELLEFMGKVLGLRLSQMT LQRGWNNKSKLLVVEDLSARQVYEKLLEAVQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63440			Protein of unknown function (D...		Lus10016760 [exp]	0	1
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Lus10035851 [exp]	2.2	0.8675
AT5G03345			unknown protein		Lus10026529 [exp]	10.6	0.8529
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008308 [exp]	14.6	0.7487
AT3G10530			Transducin/WD40 repeat-like su...		Lus10037324 [exp]	15.7	0.8204
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10000353 [exp]	17.7	0.8272
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	19.1	0.8282
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10036909 [exp]	20.2	0.8261
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10042047 [exp]	21.5	0.8109
AT5G12320			ankyrin repeat family protein ...		Lus10009696 [exp]	22.1	0.8320
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	25.7	0.8506

Compare expression of checked genes

Lus10016760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.