Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14170 493 / 1e-170 CHC1 SWIB/MDM2 domain superfamily protein (.1) AT3G01890 431 / 3e-147 SWIB/MDM2 domain superfamily protein (.1) AT3G03590 55 / 6e-09 SWIB/MDM2 domain superfamily protein (.1) AT3G19080 52 / 7e-07 SWIB complex BAF60b domain-containing protein (.1) AT2G35605 47 / 1e-06 SWIB/MDM2 domain superfamily protein (.1) AT2G14880 47 / 3e-06 SWIB/MDM2 domain superfamily protein (.1) AT4G34290 47 / 5e-06 SWIB/MDM2 domain superfamily protein (.1) AT1G49520 47 / 2e-05 SWIB complex BAF60b domain-containing protein (.1) AT1G31760 42 / 7e-05 SWIB/MDM2 domain superfamily protein (.1) AT4G22360 44 / 0.0003 SWIB complex BAF60b domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022456 [exp] 1010 / 0 AT5G14170 519 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10032049 [exp] 483 / 1e-166 AT5G14170 756 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10035214 [exp] 382 / 3e-130 AT5G14170 553 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10013893 [exp] 51 / 1e-07 AT2G14880 143 / 7e-45 SWIB/MDM2 domain superfamily protein (.1) Lus10002106 [exp] 47 / 1e-06 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10019640 [exp] 49 / 8e-06 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10009333 [exp] 47 / 2e-05 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10016581 [exp] 43 / 0.0007 AT4G22360 190 / 1e-55 SWIB complex BAF60b domain-containing protein (.1) Lus10014892 [exp] 43 / 0.0007 AT4G22360 243 / 2e-76 SWIB complex BAF60b domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G096700 [exp] 654 / 0 AT5G14170 564 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.015G094500 [exp] 641 / 0 AT5G14170 580 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.017G069300 [exp] 521 / 0 AT5G14170 768 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.001G331400 [exp] 497 / 5e-172 AT5G14170 752 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.001G297400 [exp] 51 / 2e-07 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.009G092200 [exp] 50 / 5e-07 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1) Potri.005G134500 [exp] 52 / 6e-07 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.013G070600 [exp] 48 / 2e-06 AT2G35605 108 / 2e-31 SWIB/MDM2 domain superfamily protein (.1) Potri.004G145200 [exp] 48 / 9e-06 AT1G49520 308 / 6e-103 SWIB complex BAF60b domain-containing protein (.1) Potri.009G106700 [exp] 47 / 3e-05 AT1G49520 301 / 5e-100 SWIB complex BAF60b domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02201 [flax] [poplar] SWIB SWIB/MDM2 domain
Representative CDS sequence Show only first row Show all	>Lus10016761 pacid=23149151 polypeptide=Lus10016761 locus=Lus10016761.g ID=Lus10016761.BGIv1.0 annot-version=v1.0 ATGAATAACAATACTCCGACGAGGAGTGTAGGAGCACCGCCGATTTCGTTTGCCAATCCTGGGGCTGGAGTGCAATCTGTTCCCTTGAGTCACAATGCTC CCAACCTTCTCTCTCAGTCTAAACCTCAAACACAAGCAGGACCGTTTCCTGGACACTTTCAGCTCTCGGAGCCACAAGCTCAGGTGTTAAGCCATTCCCA ACAGATGCATCCTCCACATGTTCGTTTCCAGACTCAGCTTCAATCAACCAACCATCCTACTTCTCAGCTGCAAAATCCAGTTTCTGGTAATGCTCCAGCT AATGCAGGTACCAAACGAGCTAGTCACAAACCTCCTTCTAAGGCAGCTGGAGGTTTGGGTAATGCCAACATGTCTTCACCTTTCAAGACAATGGAGTTAG CCCCTGCCCCAGATAGAAAGAGGCCGAAGCTTTCTGATAAGCTGATACCTGAAAAAGCTGCAGCCAAGTTTCCGGAGTCTGCACTTTATGCTAAGTTGCT TGAATATGAGGCTAGAGTGGATAATATTGTCACACTGAAGAGGATTGATTTCCAAGAGGCCCTTAAAAACCCTCCTCGGATAAGGAAAACACTTCGTTTG TATGTTTTCAACACTTTTGACAATCAAGGACTAGTCTCTGCCGATAAGCCTGCTGCAGAACTTCCTTCGTGGTCGTTGAAGATCGTTGGAAGAATCTTGG AAGAAGGGAAAGATCCTGTGTTAGAAGGACTGAAGCAGAAATCCTACCCAAAATTCTCCTCTTACTTCAAGAAAATCACCATAATCGTAGACCAAGGTGT CTACCCTGAGAAACAAGTAGTAGTGTGGGATAGTAGTCGATCTACGGAACTTCATGATGGCTTTGAGGTGAAAAGAAAAGGTGACAAGGAATTCACCGCT GTAATCAGATTAGAAATGAATCACATTCCGGATAAATTCAAGATTGCACCTGCTCTATCGGAAATTCTGGGCATAGAGGTAGAGACTCGTCCAAGAATTT TGATGGCAATTTGGCATTACGTGAAGTCGAATAAGCTGCAAAATCCAAATGATACAGCTTCATTCATTTGTGACTCACCACTTAAAAGATTATTTGGGGA AGACAAGATGAAGTTTTCAATGGTGGCACAGAAGATTAGTCAGTACTTGACAATTCCACCTCCTATTCATTTGGAACATACGATCAAGCTACCAGGGAAT TCTCCTGGAGGAACTTCTTGTTATGACATTGATGTTGATGTTCCCTTCCCGGTACGAAATGAAATTTCTACCTTCTTGGAGAATACAGCAAGGCAGAAAG AAATCGATGCTTATGAAAAAATAATACGCGATTCAATAAAGAAGATCCATGAGCATTGCCGAAGGCGTGCTTTCTTTCTTGGATTCAGTCACTCTCCGGC TGAGTTTATCAGCACTTTAATTGCTTCTCAGAGCAAAGATCTAAGGCTTGTAGCTGGAGATATCAACTCAAACTCAGAAGAAGAGGGCCATAAGGAGTTC TATAATCAGCCATGGGTAGAAGATGCTGTTCAACGTTACCTGAACCGCAAAGCTGCAGGCGGCGATGCAACTGGAACAGGAAGGAGTTGA
AA sequence Show only first row Show all	>Lus10016761 pacid=23149151 polypeptide=Lus10016761 locus=Lus10016761.g ID=Lus10016761.BGIv1.0 annot-version=v1.0 MNNNTPTRSVGAPPISFANPGAGVQSVPLSHNAPNLLSQSKPQTQAGPFPGHFQLSEPQAQVLSHSQQMHPPHVRFQTQLQSTNHPTSQLQNPVSGNAPA NAGTKRASHKPPSKAAGGLGNANMSSPFKTMELAPAPDRKRPKLSDKLIPEKAAAKFPESALYAKLLEYEARVDNIVTLKRIDFQEALKNPPRIRKTLRL YVFNTFDNQGLVSADKPAAELPSWSLKIVGRILEEGKDPVLEGLKQKSYPKFSSYFKKITIIVDQGVYPEKQVVVWDSSRSTELHDGFEVKRKGDKEFTA VIRLEMNHIPDKFKIAPALSEILGIEVETRPRILMAIWHYVKSNKLQNPNDTASFICDSPLKRLFGEDKMKFSMVAQKISQYLTIPPPIHLEHTIKLPGN SPGGTSCYDIDVDVPFPVRNEISTFLENTARQKEIDAYEKIIRDSIKKIHEHCRRRAFFLGFSHSPAEFISTLIASQSKDLRLVAGDINSNSEEEGHKEF YNQPWVEDAVQRYLNRKAAGGDATGTGRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10016761 [exp]	0	1
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	3.2	0.8358
AT1G10180			unknown protein		Lus10040609 [exp]	9.2	0.8486
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033487 [exp]	11.8	0.8025
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10018440 [exp]	13.8	0.7914
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10026154 [exp]	15.5	0.8135
AT3G07610		IBM1	increase in bonsai methylation...		Lus10015260 [exp]	19.9	0.8157
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10018842 [exp]	25.0	0.7242
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Lus10015690 [exp]	25.9	0.8333
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Lus10032141 [exp]	27.3	0.7510
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032119 [exp]	33.4	0.8167

Compare expression of checked genes

Lus10016761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.