Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48530 538 / 0 KING1 SNF1-related protein kinase regulatory subunit gamma 1 (.1) AT1G69800 256 / 8e-81 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) AT1G80090 43 / 0.0003 AtPV42b Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022458 [exp] 821 / 0 AT3G48530 579 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10013265 [exp] 222 / 2e-67 AT1G69800 536 / 0.0 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Lus10030788 [exp] 201 / 4e-60 AT1G69800 491 / 4e-173 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Lus10026352 [exp] 94 / 2e-20 AT3G48530 127 / 4e-32 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10042308 [exp] 86 / 1e-17 AT3G48530 125 / 1e-31 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10029432 [exp] 45 / 6e-05 AT1G15330 398 / 6e-139 Cystathionine beta-synthase (CBS) protein (.1) Lus10004227 [exp] 45 / 0.0001 AT1G15330 418 / 5e-146 Cystathionine beta-synthase (CBS) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G094700 [exp] 637 / 0 AT3G48530 627 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.012G097000 [exp] 635 / 0 AT3G48530 572 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.017G053600 [exp] 235 / 1e-72 AT1G69800 370 / 5e-125 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Potri.009G118700 [exp] 114 / 1e-27 AT3G48530 111 / 9e-27 SNF1-related protein kinase regulatory subunit gamma 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10016763 pacid=23149154 polypeptide=Lus10016763 locus=Lus10016763.g ID=Lus10016763.BGIv1.0 annot-version=v1.0 ATGGCGAGCTTGCAGTTGTTTAGACAACAGGAAGGGGCGGTGGAGAGGCAGAGTGAGAGCCCGAGGAGTCCTGAAGCCAAGCTCGGGATGAAAGTGGAAG ATCTATGGGACGTTCAGGAGCCGCAGCTCAGTCCTACCGAGAAACTCAATGCTTGCTTCGAGAATATTCCAGTTTCTGCTTTCCCTGTTTCTTCTTCCCG AGTGATTGAGATAAAATCGGATACGACTTTGGCGGAGGCGGTGAGAATTCTGGCGGATAACAAGATTCTCAGCGCGCCCGTACTCAACGTTGATGCGTCG GAGGACGCTAGTTGGATGGATAGGTACATTGGAATCGTGGAGGTTGCTGGTATAGTGGTTTGGATCTTGCAACAGTCAGAACCTCCGTCTCCTAGGAGTC CGAATTCCGGAACCTCTGCTGCATTGAAGGTGAATGGATTAACTAATGCTGCAGGAGTTGGGATCTTGGGACCTGAAGATGCTCAAGCAACTTCTGGAGA CTTTTTCGAAGATCTAACTTCCTCCGAGTTCTATAAGAATATGAAGGTTCGGGACATCTCAGGATCTTTCCGTTGGGCGCCATTTCTCGCTTTACAGAAA TCAAACTCCTTCTTGACAATGCTGTTATTGCTGTCCAAATACAAAATGAAGAGCATTCCCATTGTTGACCTGGGTGATGGGAAGATTGACAATATCGTCA CACAATCTGCTGTTATTCACATGCTGAACGAATGTGCAGGGCTTCACTGGTTTGAGAGTTGGGGAGCCAAGACCATTTCTGAAATTGGCCTTCCTCTGGT CTCGTATAATCAAATTGTTAAGGTGCACGAGGATGAACCAGTACTCCAAGTATTTAAGCTGATGAGGAAAATGAGAATTGGAGGCGTACCTGTTATGGAC GCTGAAGGCAAGAAGGCAATAGGAAACATCAGTCTAAGAGATGTTCAGTTCCTGCTAAACGCTCCAGAAATTTACCACGAATTCAGATCTATCACAGCCA AAAACTTTCTGATGGCTGTTAGGAACTACTTGAAGGATCACAAGGAAGACACACCAATGGTAAGCGGGATGATAACGTGTACTGGGAGAGACAGCATTAA GGAATTGATAAAGAAGCTGGACGGCAAACAAATTCACAGAGTATACGTTGTGGATGATGCTGATAATCTGGAAGGGGTCATTACTCTAAGAGATGTAATC TCTAGGCTTGTACATGAACCCCGTGGCTATTTCGGCGATTTCTTTGACGGAGTTCTCCCACTTCCTGCTAATAGTAGAGTTTGA
AA sequence Show only first row Show all	>Lus10016763 pacid=23149154 polypeptide=Lus10016763 locus=Lus10016763.g ID=Lus10016763.BGIv1.0 annot-version=v1.0 MASLQLFRQQEGAVERQSESPRSPEAKLGMKVEDLWDVQEPQLSPTEKLNACFENIPVSAFPVSSSRVIEIKSDTTLAEAVRILADNKILSAPVLNVDAS EDASWMDRYIGIVEVAGIVVWILQQSEPPSPRSPNSGTSAALKVNGLTNAAGVGILGPEDAQATSGDFFEDLTSSEFYKNMKVRDISGSFRWAPFLALQK SNSFLTMLLLLSKYKMKSIPIVDLGDGKIDNIVTQSAVIHMLNECAGLHWFESWGAKTISEIGLPLVSYNQIVKVHEDEPVLQVFKLMRKMRIGGVPVMD AEGKKAIGNISLRDVQFLLNAPEIYHEFRSITAKNFLMAVRNYLKDHKEDTPMVSGMITCTGRDSIKELIKKLDGKQIHRVYVVDDADNLEGVITLRDVI SRLVHEPRGYFGDFFDGVLPLPANSRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10016763 [exp]	0	1
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	1.0	0.9598
AT2G45500			AAA-type ATPase family protein...		Lus10038001 [exp]	1.4	0.9197
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Lus10004392 [exp]	3.9	0.8849
AT3G24060			Plant self-incompatibility pro...		Lus10023675 [exp]	7.1	0.8476
AT1G11020			RING/FYVE/PHD zinc finger supe...		Lus10017764 [exp]	7.3	0.8824
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	11.2	0.8921
AT5G63620			GroES-like zinc-binding alcoho...		Lus10039625 [exp]	11.8	0.8652
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10009714 [exp]	13.4	0.8748
AT3G12100			Cation efflux family protein (...		Lus10021058 [exp]	13.7	0.8644
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10040964 [exp]	14.7	0.8560

Compare expression of checked genes

Lus10016763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.