Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50380 771 / 0 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT3G14090 409 / 9e-135 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G72470 397 / 5e-130 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT1G54090 382 / 3e-124 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G52340 346 / 2e-110 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT3G29400 344 / 3e-109 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1) AT5G03540 342 / 8e-109 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G58430 339 / 6e-108 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT5G13150 337 / 2e-106 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G61010 301 / 4e-93 ATEXO70E2 exocyst subunit exo70 family protein E2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022459 [exp] 1035 / 0 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10008126 [exp] 423 / 9e-140 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10035146 [exp] 398 / 7e-130 AT3G29400 579 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10031956 [exp] 398 / 7e-130 AT3G29400 581 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10013163 [exp] 382 / 7e-127 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10043432 [exp] 342 / 2e-108 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10021283 [exp] 338 / 5e-107 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10034151 [exp] 320 / 1e-99 AT5G03540 991 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10011334 [exp] 313 / 1e-97 AT5G13150 541 / 0.0 exocyst subunit exo70 family protein C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G094800 [exp] 888 / 0 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 884 / 0 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 444 / 3e-148 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.017G093966 [exp] 434 / 4e-144 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1) Potri.003G068700 [exp] 432 / 1e-143 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G058200 [exp] 409 / 2e-134 AT5G61010 585 / 0.0 exocyst subunit exo70 family protein E2 (.1.2) Potri.008G017800 [exp] 371 / 7e-120 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.013G152900 [exp] 362 / 3e-116 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.010G241800 [exp] 361 / 7e-116 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.019G124000 [exp] 348 / 4e-111 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10016764 pacid=23149071 polypeptide=Lus10016764 locus=Lus10016764.g ID=Lus10016764.BGIv1.0 annot-version=v1.0 ATGAAGGGGACGGACCTCTCACAGCTTGATATGGCCGCCGCTGCCGCTAGTCTCGCCGGTGCTGGAGCTGACGATCGGGTCATGGCTGCTGCTCAGCAGA TCGTCAATAGTCTCAACACTCCCAAGGACGTTAGAGAAGACATGTTGCTTATTTTCTCCAGTTTCGACAATCGTCTCTCCAACATCACCGATTTGATCAA CGACGACGCCGGCAAGGCCCAGTTGAAGCTCGAATCTGCTGAGAAGGTTATCATGCGATGGGATTCTTCTCGCAGTTCCCTTCCCTCCTGGTACGACTGC CCCGAAGATGCCGTCGAGTATTTGACTGCTGTCGATGAGATGCTTGACTTGCTCGACAACCTTTCCCTTAAGGAGGACGATACTAACGAGGTGGCCGACC GAGCAGAGACTGCCGTCCAGGTTGCTATGACAAGGCTCGAGGAAGAGTTTCGCCATATACTCACCAGAAACACCGTCCCGCTCGATGCCGACAGGCTCTA CGGATCTATTCGGAAGCTTCCTCTTGCTTTGCTCGCCAACGAGGGCGGTGGTGACATCATTGAGGATGATTTCGACACTAGTTTTGGCGAGGTGGATAGT GCTCGTGGCAGTGGATATTTCCACGACAGGGGAGCTAGTTTGGGGGATGACATTTGTGTTGATTTGATCAATCCAGATGCTGTTTGGGAGTTGAGGGAGA TTGCAGATCGGATGATCCGGTCTGGGTATGAGAAAGAGTGTGTTCAGGTTTACTGTAACGTTAGGAGGGAGGCTTTGGACGAGTGTTTAGCTATTCTGGG TGTTGAGAAGCTCAGTATAGAAGACGTTCAGAGGATTGAGTGGAAAAGTTTGGATGAAAAGATGAAGAAATGGGTGCAAGCTGTTAAGATCGGAGTTAGA GTGCTTCTAACTGGGGAAAGGAGATTGTGCGATCATATCTTTGGTACTTCTGATACTGCTAAGGAGATTTGTTTCAATGAAAACGCTAAAGGGTGTGTAA TGCAGTTGCTAAACTTCGGGGAGGCTGTGTCTATTGGGAGGAGGTCATCAGAAAAGTTGTTTAGGATATTGGACATGTACGATGTACTGAGAGATGTGAT TTCGGACTTGGAGATGATGGTAACAGATGACTTGCTGTGTAGTGAGGCTAAGGGAGTTCTATCTGGGCTTGAGGAGGCTGCTAAGGGAACTTTCTCTGAA TTTGAGAGCGCTGTGCAGAGTGAGAATTCCAGGAAGCCTATGATAAGCGGAGAGATTCATCCGCTTACAAGGTATGTGATGAACTATTTGAAATTAGTTG TTGATTATAGCCAGACATTGAATTCCCTTTTGGAGAAGGATGATGACAAGGACAAGGAGGATGAAGATGGTGGTGGGGAGGAGGAGGAGATTGCGAGTCC AATATCAAGGAGAGTATTGGCACTGTTATCGACCCTGGAGTTGAATCTGGAGGCGAAATCGAAACTATACGAGGATGGTGCTATGCACTACATATTTCTG ATGAATAATATATTGTACATAGTGCAGAAAATAAAAGATTCGGAACTTATAAAGCTTGTAGGAGATCAGTGGGTGAGGAAACGGAGAGGTCAGATACGGC AGTATGCTACATCGTATCTAAGAGCTGCTTGGAGCAGGACACTGTCGTGTTTGAAAGATGAAGGGATAGGTGGAAGCTCGGGGAATGCATCTCGGGTTGC ATTGAAGGAAAGGTTTAAGAATTTCAATGCATGCATTGAAGAAATATACAGAGTTCAAACAGGTTGGAAGGTAACAGATTCGCAGCTTAGGGAAGAGCTA AGGATATCAATATCTGAGAAGGTGATACCAGCATACAGAGCATTTGTTGGGAGGTTTGGAAGCCAGCTAGAGAGTGGGAAGCATTCGGGGAAGTACATAA AGTTCACACCAGAGGATTTGGAGAATTATTTGCCAGATCTATTCGAGGGGACACCTCTGGTTATTCACCACGTCAGAAGAAAGGGTTAA
AA sequence Show only first row Show all	>Lus10016764 pacid=23149071 polypeptide=Lus10016764 locus=Lus10016764.g ID=Lus10016764.BGIv1.0 annot-version=v1.0 MKGTDLSQLDMAAAAASLAGAGADDRVMAAAQQIVNSLNTPKDVREDMLLIFSSFDNRLSNITDLINDDAGKAQLKLESAEKVIMRWDSSRSSLPSWYDC PEDAVEYLTAVDEMLDLLDNLSLKEDDTNEVADRAETAVQVAMTRLEEEFRHILTRNTVPLDADRLYGSIRKLPLALLANEGGGDIIEDDFDTSFGEVDS ARGSGYFHDRGASLGDDICVDLINPDAVWELREIADRMIRSGYEKECVQVYCNVRREALDECLAILGVEKLSIEDVQRIEWKSLDEKMKKWVQAVKIGVR VLLTGERRLCDHIFGTSDTAKEICFNENAKGCVMQLLNFGEAVSIGRRSSEKLFRILDMYDVLRDVISDLEMMVTDDLLCSEAKGVLSGLEEAAKGTFSE FESAVQSENSRKPMISGEIHPLTRYVMNYLKLVVDYSQTLNSLLEKDDDKDKEDEDGGGEEEEIASPISRRVLALLSTLELNLEAKSKLYEDGAMHYIFL MNNILYIVQKIKDSELIKLVGDQWVRKRRGQIRQYATSYLRAAWSRTLSCLKDEGIGGSSGNASRVALKERFKNFNACIEEIYRVQTGWKVTDSQLREEL RISISEKVIPAYRAFVGRFGSQLESGKHSGKYIKFTPEDLENYLPDLFEGTPLVIHHVRRKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10016764 [exp]	0	1
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	3.7	0.9213
AT5G18610			Protein kinase superfamily pro...		Lus10012814 [exp]	4.9	0.8852
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	5.3	0.8869
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	6.2	0.9094
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022189 [exp]	9.7	0.8886
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10023138 [exp]	11.5	0.8819
AT3G01170			Ribosomal protein L34e superfa...		Lus10030686 [exp]	13.5	0.8804
AT5G55560			Protein kinase superfamily pro...		Lus10001739 [exp]	14.3	0.8661
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Lus10035391 [exp]	15.1	0.8920
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	18.8	0.8785

Compare expression of checked genes

Lus10016764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.