Plant FIBer expression Database

Lus10016766 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66810 734 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022461
[exp]
1268 / 0 AT5G66810 756 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G137100
[exp]
900 / 0 AT5G66810 748 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10016766 pacid=23149070 polypeptide=Lus10016766 locus=Lus10016766.g ID=Lus10016766.BGIv1.0 annot-version=v1.0
ATGATGAACTCTGCGCCAGTCAATTGGGATGCTCTCGACCCTCTTGTTATTGATTTTGCAACATCCGAGAATTTGATTGAGCAGCAGTCTCTGGATTCCC
CTGCTTCCCCGTTTTGTTCTCCTTCCCCTTCTTCTTCTTCTTCTTCCTCCGTCTCTTCCTCTTCGTATCATTCCAGGCTGATCATTCGCCAGATCAGGCT
GTGCTTGGAGTCCGGGAACATCGATTCCGGCATCCTTCTTCTCCGAGCTCACGCTCCTTCCATTCTCGGCAATCACCGGCTTCTATTTCGCTTGCAGAAG
CAGAAATTTATCGAGTTGTTAAGGGGAGGGACGGAAGAGGCCAGAGATGCCGCACTTCATTGCATGAGAACGGCTCTTGCTCCCTGCGCTCTTGATGCTT
ATCCGGAAGCATATGAGGAATTCAAGCATGTTCTCCTTGCCCTTATATATGACATAAATGATCAGACTTCTCCTGTGGCAAATGAGTGGTCTGAAAAGAA
GCGGAGTGAAATTGCTGGGTTGATGACTTCTGTTTTAAGAGCACATTTGCACGCATATGATCCAGTCTTCTCGATGGCATTGCGATATTTGATAAGCATA
CACAAAAGCTTTTGCTTTCGACAAGGAATGACATCCCCAATTTCAGACCTAACTGAGAGGTTGCTCCTTGAGGAGCGTGACCCTCCAGCTGTGCCAGAGG
AGAGTTATTATGAGGCTCCTCCATTTGATGAGGTCGACATACAAGCTCTTGCACATGCGGTTGAGCTAACAAGGCAGGGAGCTGTTGATAGCTTGAGATT
TGCTAAGGGAAGCTTGTTTCAGGCGTTCCAGAATGAATTATGTCGAATGAAATTGGACGTATCCATGGTAGATGAACTTGTTCGAGAGTATTGTGTTTAT
AGAGGCATCATTGATTCGGGCTATGTGTCATTTTCTGGATGCAAAGTAAATCAATCTGAATCGAGTCACATACCATCTCAAAACGATTCTCCTGAAGTGG
ACCAGGCTACCAGTAAACATCCAGATGGTGAAAATTCTGTGATCACGATGCCAATGGATGTTTCTTCAGTAAGCTCCAACAGCATGCCAGCTGGGACTGA
TACTGAGTTGAGAGATGCTTCTGAATCAGCTAGGAATTGTGCAGATTGCAGTACTAGTGGGTTGCAGCAACCTATCACTTCAAAAGTTGTTCAAAGAAGC
GGAGAGAGGAGTAAGCGGAAGCGTTGGAGGGGTCGACAGGATGACCATGAATATCTCTCTTCTGGTGTAGCTTGCAGTCAGCAAGATCTTGATGGGAGAA
AACACCAGGGAATAGAAAAACCGTCCACTGAAGAAGATGTAGACAACACGGATGATAAGTATGAGATTCTGCTGGGGATCAAGGATCTAGCAGCTAGAGG
CATGGCTAAAGAGGTTGTGGAACAAATCAATACCTTGGATCCGAGCTTCTTTTCACAGAATCAGGGCTTGCTCTTCCAGTTAAAACAGGTTGAATTCCTC
AAGCTTGCCAGTTCCGGTGATCACTCAGGTGCTCTAAAGGTGGCCTGCTCACATATGGGTCCTTTAGCATCTAGTGATCCTTCTCTTCTGAAGCCCTTGA
AGGAGACTCTAGTTGTGTTACTCCAGCCACCGCAAGATATGCTCGGAAAAGGCTTACCTTTAAATGCTCTTTCGAATTCCCTCCAGGTTGCAATTGGTAC
AAGGCTTGGTATTGAAGAACCACAACTGATGAAGTTAATTAGAGCAGCCCTTCACAGTCACAGTGAATGGTTTAAGCTGCAAATGTGTAAAGATCGCTTT
GAGAATCTTATGAGGATAGATTCCCTGAAAGAAGTAGATACTCGTTTGCTCTCAGCTAGCTCCATGTCCAAGTCCAATGGAGATAGTTGCTCCTCCCAAG
TCACAACGACATCTTCGAGTGTGAGGTTGGCTGAAGATGGAACGAGCCCGACTCAAATTTCGCCTGGGGATGTATGTGATGAGAGTGCAATACTCAAAGT
GATGGAGTTTCTCGCCTTGCCAAGGGCTGACGCCATCCATCTTCTCGCACAGTACAACGGAAATGCAGAGACTGTAATCCAACAAATATTTGCATAA
AA sequence
>Lus10016766 pacid=23149070 polypeptide=Lus10016766 locus=Lus10016766.g ID=Lus10016766.BGIv1.0 annot-version=v1.0
MMNSAPVNWDALDPLVIDFATSENLIEQQSLDSPASPFCSPSPSSSSSSSVSSSSYHSRLIIRQIRLCLESGNIDSGILLLRAHAPSILGNHRLLFRLQK
QKFIELLRGGTEEARDAALHCMRTALAPCALDAYPEAYEEFKHVLLALIYDINDQTSPVANEWSEKKRSEIAGLMTSVLRAHLHAYDPVFSMALRYLISI
HKSFCFRQGMTSPISDLTERLLLEERDPPAVPEESYYEAPPFDEVDIQALAHAVELTRQGAVDSLRFAKGSLFQAFQNELCRMKLDVSMVDELVREYCVY
RGIIDSGYVSFSGCKVNQSESSHIPSQNDSPEVDQATSKHPDGENSVITMPMDVSSVSSNSMPAGTDTELRDASESARNCADCSTSGLQQPITSKVVQRS
GERSKRKRWRGRQDDHEYLSSGVACSQQDLDGRKHQGIEKPSTEEDVDNTDDKYEILLGIKDLAARGMAKEVVEQINTLDPSFFSQNQGLLFQLKQVEFL
KLASSGDHSGALKVACSHMGPLASSDPSLLKPLKETLVVLLQPPQDMLGKGLPLNALSNSLQVAIGTRLGIEEPQLMKLIRAALHSHSEWFKLQMCKDRF
ENLMRIDSLKEVDTRLLSASSMSKSNGDSCSSQVTTTSSSVRLAEDGTSPTQISPGDVCDESAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G66810 unknown protein Lus10016766
[exp]
0 1
AT2G31260 ATAPG9, APG9 autophagy 9 (APG9) (.1) Lus10033881
[exp]
5.0 0.9240
AT2G01460 P-loop containing nucleoside t... Lus10025598
[exp]
5.1 0.9159
AT4G11670 Protein of unknown function (D... Lus10006312
[exp]
7.4 0.8967
AT1G07650 Leucine-rich repeat transmembr... Lus10031374
[exp]
12.4 0.8796
AT1G04950 EMB2781, ATTAF6... TBP-associated factor 6, EMBRY... Lus10002443
[exp]
13.8 0.9094
AT4G35780 STY17 serine/threonine/tyrosine kina... Lus10028392
[exp]
16.2 0.9053
AT1G17720 ATBBETA, ATB BE... Protein phosphatase 2A, regula... Lus10001239
[exp]
17.7 0.8944
AT3G15160 unknown protein Lus10019614
[exp]
19.0 0.8599
AT3G23270 Regulator of chromosome conden... Lus10035397
[exp]
19.9 0.8879
AT1G34540 CYP94D1 "cytochrome P450, family 94, s... Lus10041637
[exp]
20.3 0.9146

Lus10016766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.