Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022462 [exp] 449 / 6e-159 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G135700 [exp] 157 / 4e-45 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10016767 pacid=23149067 polypeptide=Lus10016767 locus=Lus10016767.g ID=Lus10016767.BGIv1.0 annot-version=v1.0 ATGGAAGATGATGGTTTGCAACTGGAACACAATGGAAGAGAACATCCGACGACGACGGTGAGGTCGCAGATGAAGGAACTGATCAAGACCAATGAGGAAT TGAAGGTCACCAAAGACCAAGCGATGCAGTCATGGTTGGATTCCAAGCCCTTAATCGACGATCTCGAGAAACTACAGTCAGATGTTGACGCAGCCAAAAA CAGGGAATCCATCTCTAAAGCCGTCGTCTCGGACCTGCAATTGGAGCTCGAGGACAATCAGCGGCGGATTCGGTCCAAGATGGAAGAGGAGCTGCAGGCA ATGAAGGCCACCAATGAATTGACTAAGGCCGTTGACCAGACGTGCAAGTATCTGGAGGCGATCAAGCTGGAAGCCGACCAACACCGCAGGGAGAGGCTGA AACTGAAGCAGCTCCTCCGGATTCGCCGCCAGACGCTCCGATCCCTTCAATTGAAGCTACGCGCCGTTAGGATCGAGGCCGAGGCGTTCGCCACGTCCTT GCAGGACGCGTCGGCGAACATCGACAGGTCGAAGGCGGAGAACAACAACGACAGCATACAATTGACCGCCGATGAGTACGGCTCGCTGGCGCGTCGGGCA CTGGAGGAGCAGTCGCTTTCACAGTGGAGAGTCTCCGCCGCGGAAGAGCAGAAGCTGGAAGCGGAAGCCAACAGGAACCTCGCGCTGTCGAGGTTGAGTC TAGTTTACAAGACGAAGAGGAGCCGACGATGGGAGGTGGAGAAGGAGGAGGATAATATAGTGGAAGACGATGACGAGGCAACGGCGGCGGAGGTGAGGAG AGGAGATTCAAGTGGGAGAGTTGGAGGGGAGATTGTGATACCGAAAGCTAGGGCACGGGCGATGAGGGAGGAAGAATGTAAGAAGCGAGAGTGGGCTAGG AGTCGTGGTAACAGCAACAACAACAACAGCAGCAGCAGGAAGAGAATGGTAGTGAAGCAGAAGAGGAGGAAGAAGCAATCGTTTTTGGGTAAAATCACCA ATTTAATCAACGGAATTAAGAAGTGGTTCCGTTGA
AA sequence Show only first row Show all	>Lus10016767 pacid=23149067 polypeptide=Lus10016767 locus=Lus10016767.g ID=Lus10016767.BGIv1.0 annot-version=v1.0 MEDDGLQLEHNGREHPTTTVRSQMKELIKTNEELKVTKDQAMQSWLDSKPLIDDLEKLQSDVDAAKNRESISKAVVSDLQLELEDNQRRIRSKMEEELQA MKATNELTKAVDQTCKYLEAIKLEADQHRRERLKLKQLLRIRRQTLRSLQLKLRAVRIEAEAFATSLQDASANIDRSKAENNNDSIQLTADEYGSLARRA LEEQSLSQWRVSAAEEQKLEAEANRNLALSRLSLVYKTKRSRRWEVEKEEDNIVEDDDEATAAEVRRGDSSGRVGGEIVIPKARARAMREEECKKREWAR SRGNSNNNNSSSRKRMVVKQKRRKKQSFLGKITNLINGIKKWFR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016767 [exp]	0	1
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10035627 [exp]	6.6	0.8180
AT5G58750			NAD(P)-binding Rossmann-fold s...		Lus10040675 [exp]	7.2	0.8712
AT4G05160			AMP-dependent synthetase and l...		Lus10013831 [exp]	9.5	0.8138
AT5G63380			AMP-dependent synthetase and l...		Lus10022335 [exp]	9.7	0.8049
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039363 [exp]	10.5	0.8350
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006611 [exp]	12.3	0.8363
AT5G09310			unknown protein		Lus10037415 [exp]	30.2	0.8330
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10022385 [exp]	32.4	0.7733
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10017521 [exp]	48.7	0.7601
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10027458 [exp]	58.6	0.8025

Compare expression of checked genes

Lus10016767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.