Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66850 438 / 9e-147 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G63700 293 / 1e-89 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G53570 285 / 8e-89 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT4G08500 209 / 2e-60 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT1G09000 208 / 2e-59 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 202 / 1e-57 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT4G08480 202 / 8e-57 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT4G08470 196 / 6e-56 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT3G06030 191 / 2e-53 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT3G13530 189 / 3e-51 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022461 [exp] 817 / 0 AT5G66810 756 / 0.0 unknown protein Lus10019635 [exp] 612 / 0 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10009339 [exp] 595 / 0 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10021766 [exp] 391 / 6e-127 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10024645 [exp] 310 / 2e-95 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10032279 [exp] 309 / 2e-95 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 298 / 6e-92 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 290 / 4e-88 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10002096 [exp] 279 / 1e-82 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G135100 [exp] 514 / 1e-176 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.007G039800 [exp] 508 / 1e-174 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 391 / 8e-128 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 387 / 7e-127 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.015G146700 [exp] 304 / 3e-93 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 303 / 5e-93 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 295 / 3e-90 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 287 / 4e-87 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.005G062500 [exp] 277 / 2e-85 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.007G106800 [exp] 276 / 4e-85 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10016768 pacid=23149119 polypeptide=Lus10016768 locus=Lus10016768.g ID=Lus10016768.BGIv1.0 annot-version=v1.0 ATGAAAGATCACCATAGCCTCTGTAGCAGCAGCACATTCGGCTCCCGTTCTAGTTCGTCCGACGGCCCCAGGCTCACCCGCCAGAGGAAGCTCCGGCACC TATCTGACAAGGATGTTGCCAGCAGCGACGAGCCTTTTCAACTTTTACGCTCTCACAGCACTCTCTCGTCACCGCCACGGACCTCCTCAAGGCTGCCAAC TTCGCCCGTCCCAGTGCCGGTGCCTCTGCCATTACCCCAGCCGTCGCGTGAGAATTCCAATACCGGATTTGTGGACTTGCGGTTGCCGTCTCCCAAGGAG AGGGAGAAAGAGAAGGACCGCGATTGCTTTAGAGAGAAAAGTGATGTTGGTGGAGGTTTCCCTCTCTACACTACCCCGCCTTCCAGACTATTGGGCGGGC GAGAAACTAGGAAGACAGCAGATCAGCCAAGGGAGAAGAGATCAAATAAACCGGCGGTGGCAGGTTTGGACTTGAGCAGTTGCAGAGTTTTCAATCCAGC AAATAGTTCGTCCAACAGTCCATATGCAAGTCCTGAAATCTGTCCGCAAAGAATAAGAAATGCCTTGAGCACATCTCCCTACTACAATATGATTCCAAAC GGGAAGCAAGGTTGGTCTGCACCTGAGATGTCTACACCAGGTCTCTCCCCACCGGCATTTTTTGATTGCACGACACTTGGTGGTGATAATTCTTCCCTTC CTAGCCCGGCAAATACAAGTCCTCCATCTCCGGTGACTGCTAGAACATCATTTGAAATTCCAGCTGCTCGGCGTGAAAGCAACGCAAATGTAGAAGTCCA CTGTGTGCTGCCACCAACAGCATTGTGTGCGATGAAAGAGGTTGATATTTTTCCTGATGATCCAAAATCTCAAGAATGCATTAAGCAACTAGAGCAGGAA ATTAAAATTCTTAGCAAACTGAAACATCCCAACATTGTGCAGTATTATGGTAGTGAAATAGTTGAGGGCCACTTCTATATTTATTTAGAGTATGTTCATC CAGGTTCAATCAATAAGTATGTCCGTGAACATTGTGGAGCAGTAACAGAATCAATTGTACGTAGTTTTACCCGCCATATCTTATCTGGGTTGGCATATCT GCATACTATGAAGACAGTACATAGGGACATTAAAGGGGCAAATTTGCTTGTGGATGCATCTGGTGTTGTGAAGCTAGCTGATTTTGGGATGTCAAAGCAT CTTACCGGACAAGTTGCTGAACTTTCACTGAAGGGGAGTCCATACTGGATGGCACCAGAGCTTATGCAAGCCGTAATTCAGAAGGACAATAACTCTGATC TTGCTCTTGTTGTCGACATTTGGAGTTTAGGATGCACTATCATTGAAATGTTTACGGGAAAACCTCCTTGGAGCGAGTTTGAGGGTGCCGCAGCTATGTT CAAAGTAATAAAAGACAGTCCATCTGTACCTGAAACATTGTCAGCTGAAGGCAAGGATTTCCTTGTTTGGTGTTTCAAAAGAAACCCAGCAGAGCGGCCA TCTGCTTGCTTGTTATTAGAACATAGGTGGTTGAAACAGCTCACCGATGCCTCACAAATGAATGGGTCGAGATCAATGGACTGA
AA sequence Show only first row Show all	>Lus10016768 pacid=23149119 polypeptide=Lus10016768 locus=Lus10016768.g ID=Lus10016768.BGIv1.0 annot-version=v1.0 MKDHHSLCSSSTFGSRSSSSDGPRLTRQRKLRHLSDKDVASSDEPFQLLRSHSTLSSPPRTSSRLPTSPVPVPVPLPLPQPSRENSNTGFVDLRLPSPKE REKEKDRDCFREKSDVGGGFPLYTTPPSRLLGGRETRKTADQPREKRSNKPAVAGLDLSSCRVFNPANSSSNSPYASPEICPQRIRNALSTSPYYNMIPN GKQGWSAPEMSTPGLSPPAFFDCTTLGGDNSSLPSPANTSPPSPVTARTSFEIPAARRESNANVEVHCVLPPTALCAMKEVDIFPDDPKSQECIKQLEQE IKILSKLKHPNIVQYYGSEIVEGHFYIYLEYVHPGSINKYVREHCGAVTESIVRSFTRHILSGLAYLHTMKTVHRDIKGANLLVDASGVVKLADFGMSKH LTGQVAELSLKGSPYWMAPELMQAVIQKDNNSDLALVVDIWSLGCTIIEMFTGKPPWSEFEGAAAMFKVIKDSPSVPETLSAEGKDFLVWCFKRNPAERP SACLLLEHRWLKQLTDASQMNGSRSMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10016768 [exp]	0	1
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040585 [exp]	1.0	0.7983
AT1G60200			splicing factor PWI domain-con...		Lus10013003 [exp]	6.9	0.7359
AT3G56250			unknown protein		Lus10030552 [exp]	7.3	0.7205
AT3G12040			DNA-3-methyladenine glycosylas...		Lus10021071 [exp]	9.5	0.6944
AT5G62760			P-loop containing nucleoside t...		Lus10004265 [exp]	9.8	0.7381
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10032500 [exp]	11.5	0.7006
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	15.0	0.6961
AT5G65380			MATE efflux family protein (.1...		Lus10020951 [exp]	15.2	0.6734
AT5G63440			Protein of unknown function (D...		Lus10022455 [exp]	17.2	0.6685
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10007763 [exp]	17.3	0.6801

Compare expression of checked genes

Lus10016768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.