Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15940 201 / 6e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G04070 198 / 9e-59 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G50430 98 / 2e-21 unknown protein AT5G02540 63 / 1e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 56 / 3e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23430 54 / 7e-08 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G27760 52 / 4e-07 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53090 48 / 1e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 47 / 2e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53100 45 / 6e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022466 [exp] 327 / 4e-106 AT5G15940 400 / 1e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022468 [exp] 236 / 1e-69 AT3G50430 349 / 9e-111 unknown protein Lus10003204 [exp] 57 / 2e-08 AT4G24050 499 / 3e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10028534 [exp] 57 / 2e-08 AT4G27760 530 / 0.0 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042088 [exp] 56 / 3e-08 AT5G50130 460 / 3e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10032281 [exp] 55 / 6e-08 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024649 [exp] 54 / 1e-07 AT4G11410 446 / 5e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10018092 [exp] 49 / 4e-06 AT5G50130 403 / 1e-140 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10009112 [exp] 47 / 2e-05 AT4G27760 510 / 0.0 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G453500 [exp] 226 / 3e-69 AT5G15940 405 / 5e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G133500 [exp] 137 / 2e-34 AT3G50430 429 / 4e-142 unknown protein Potri.001G103000 [exp] 61 / 5e-10 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 56 / 4e-08 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G028900 [exp] 56 / 4e-08 AT4G27760 553 / 0.0 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G087800 [exp] 54 / 8e-08 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G143800 [exp] 52 / 4e-07 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G081102 [exp] 52 / 4e-07 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 52 / 4e-07 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G182000 [exp] 47 / 2e-05 AT4G27760 432 / 1e-151 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016771 pacid=23149046 polypeptide=Lus10016771 locus=Lus10016771.g ID=Lus10016771.BGIv1.0 annot-version=v1.0 ATGGATAATATCTGTGCGGAGGAACCAAAATTTGTGTTCTTAGGGAGTTTGGTCCCGTTTGTTTGTTCATTGGTTGAACAAGACACTACTCCAGAAACCA AAGTTCATCTCCAAGATCAGCATTCAACTATCTCCATAGTTGTCAATCTTGTGCCTAAGCTTTTATGTTGGTGTGTTGGCAAGCGAGAAACTATTGAACA GTCCACGTTCCACTACTTCACTCACAAACTGTTGATGCTAATATTGAGGCTTAGTTACGTAACTCATTTAAGTACCACCACGCTTGTCTCCTGGTTGCAA CTTCTCCATGATTACTTTGAAGAGCTTCTGTTAAAACCCATTTCTAGGGTCAAGCCTGGGCAAATGAAAGGAATTACGGAGCTCTACAGATGGATTCAAC ACCATCTGCAAAGCGACTTTACTTTTGAATCTGAAACGTGCATGGACGATCATATACTTTTTGCAGGATCTTTTCTCCAGCTATACCTGCACGAGGATGA CTTATTATCTCAGGTTCTTCTGCAGTTGGTTAGTGCATCATCCTGTCTGGAACAACAGACAGGGGTTGGGAAGGATATGTTTCGTGATACCAAAAATTAT ATTGGTTATATTGTTTCAAATCTTTTTAATCCAGTGAAATTGTTCCATCTATTCCTGTCAGAGCTGCACTATGATCATCAGGTGCTTCTTGATTACCTTA TATCCAAGGATCTAGGCATCAAATGTGCTGAATATCTGTTGAGGATGATGGGTACAAATTACACCGGTGCATTCTTTCTGACCAAAGCTATATTACCGCT TCTCAAAAATAGCCCTGGTGGTTCACGGATAGTGAATGTAACATCATTTACTCATCGAGCAGTATTTAATGCACAGTTTAATGAAGAAACTGTCACTGGG AAATGCTTCTTCAGATCGAAAGAATATCCTTATGCTCGTGTATATCAGTACTCCAAACTGTGCCTTCTCTTGTTCACATATGAGCTTCATCGGCAACTCA AGTTAGAGGAGGGATCTAATCAAGTCTCTGTTATTACTGCAGATCCTGGAATAGTGAAAACCAACGTCATGCGTGAAGTTCCTTTTTCTCTTTCCCATGT CACGTTTCTGGTATTCAGGGTACTGGAACTCCTGCAGTCGCCAGAGGATGGGATTAACTCCATCCGGGATGCTAGTTTTGCCCCATCACATGTATCTGGT GATTACTTTTTCAGCGGAGAAGGAAGAACATTGAAGTCTTCTGTGCATTCTTACGAGACCGTACTTGCAGAGAAGCTCTGGAGCATTGCAAGCTGCTTTT CAAATAAAAACTTGCTTCCAAAGCCACCTCCTCGTCAAGTTAGTGGTTATGAGATAGAGTCAGAAAAACTTCATGAAGCAGTACCTTTTTTAAGTAATAG AAAACGGAATCGCTATCATAAACCGAGATATGTTGCCCTGATCAAGCTTTTATTCAAAGATTGCGATGGACGAGTTTGTTATATTCATTACCCGCTCACC AACTAA
AA sequence Show only first row Show all	>Lus10016771 pacid=23149046 polypeptide=Lus10016771 locus=Lus10016771.g ID=Lus10016771.BGIv1.0 annot-version=v1.0 MDNICAEEPKFVFLGSLVPFVCSLVEQDTTPETKVHLQDQHSTISIVVNLVPKLLCWCVGKRETIEQSTFHYFTHKLLMLILRLSYVTHLSTTTLVSWLQ LLHDYFEELLLKPISRVKPGQMKGITELYRWIQHHLQSDFTFESETCMDDHILFAGSFLQLYLHEDDLLSQVLLQLVSASSCLEQQTGVGKDMFRDTKNY IGYIVSNLFNPVKLFHLFLSELHYDHQVLLDYLISKDLGIKCAEYLLRMMGTNYTGAFFLTKAILPLLKNSPGGSRIVNVTSFTHRAVFNAQFNEETVTG KCFFRSKEYPYARVYQYSKLCLLLFTYELHRQLKLEEGSNQVSVITADPGIVKTNVMREVPFSLSHVTFLVFRVLELLQSPEDGINSIRDASFAPSHVSG DYFFSGEGRTLKSSVHSYETVLAEKLWSIASCFSNKNLLPKPPPRQVSGYEIESEKLHEAVPFLSNRKRNRYHKPRYVALIKLLFKDCDGRVCYIHYPLT N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15940			NAD(P)-binding Rossmann-fold s...		Lus10016771 [exp]	0	1
AT3G06440			Galactosyltransferase family p...		Lus10043102 [exp]	1.0	0.8754
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10042983 [exp]	1.4	0.8564
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10026189 [exp]	1.7	0.8402
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10032487 [exp]	4.0	0.8331
AT5G16610			unknown protein		Lus10010975 [exp]	6.6	0.7928
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10023788 [exp]	6.7	0.7875
					Lus10009807 [exp]	7.7	0.7756
AT3G56160			Sodium Bile acid symporter fam...		Lus10043384 [exp]	9.5	0.8093
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10014828 [exp]	10.1	0.8220
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10028489 [exp]	13.3	0.8105

Compare expression of checked genes

Lus10016771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.