Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50420 256 / 8e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 146 / 2e-39 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 142 / 4e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02330 138 / 1e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18520 137 / 1e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 137 / 2e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 137 / 2e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G34400 135 / 6e-36 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G38010 132 / 3e-35 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G13600 133 / 4e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022469 [exp] 543 / 0 AT3G50420 720 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 143 / 3e-38 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 142 / 3e-38 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 140 / 2e-37 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034715 [exp] 137 / 2e-36 AT5G04780 676 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 137 / 2e-36 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026460 [exp] 137 / 3e-36 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 136 / 4e-36 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10032091 [exp] 136 / 5e-36 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G131800 [exp] 308 / 1e-100 AT3G50420 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 149 / 3e-40 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 147 / 9e-40 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 144 / 3e-39 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G108000 [exp] 143 / 1e-38 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G066100 [exp] 142 / 5e-38 AT5G13270 977 / 0.0 REQUIRED FOR ACCD RNA EDITING 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G170300 [exp] 139 / 3e-37 AT4G18520 717 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 138 / 1e-36 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 137 / 2e-36 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G151200 [exp] 137 / 2e-36 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016772 pacid=23149116 polypeptide=Lus10016772 locus=Lus10016772.g ID=Lus10016772.BGIv1.0 annot-version=v1.0 ATGCCGCCATTATCGACCCTGATACAGTACTGCACCATCGTCACTTCGCTTAAGAAGGCGCGTCAGCTACACGCTCTGATCTTAGCCACCACAACGTGTG CCAACTATGCACTCTCTCCGTATGTAAACAACAACATTGTTTCTATGTACGGCCGTTGCGGTTCCCTTTCAGAAGCACATCAGGTGTTCGACCGAATGCC TGTGAGAACCACTGTTTCCTATAATGCGCTTATTGCAGCATATTCTAAAGAGCCCGGCCTTGAGATCCGGTGCTTTCAGCTGTTTCAGGATATGAGAGGT GAAGGGATGATGCCTAGTGGGTCAACTTTCGTGAGCTTACTGCAAGCTTGCTATGGGCTCGAGGATTGGGTTATCGGCTCCTTAATTCATGGTCAAGTAG TGAAATTTGATGGGTTGGATAATGTTTCCCTCCAAACATCATTATTGGGGATGTACTCGAATTGTGAAAATTTGAAGTCTGCCTATCGAATATTTGAGGA GGTGGTAGTTAAAGACCATGTCATGTGGACTGCCATAACATTTGGTCTCTTCAAGAATGAGGAGATACGAGCAGGGCTCCGTCTATTTAATGCGATGTTG AGATCTGATGTTACTCCTACTCAGTTCACATACTCAACAATGCTAAACGCTTGTGCTAAGTTTAGAGAGTACAGTGTTGGAAGGATGATTCACTCTCAAG TTATTGTTTTGGGCGTACCAGATGATTCGAAATTGCAAAACACCTTGATTGACATGTATTCTAGCTGTGGAGACACAGGAACTGCTTTTGATTGCTTCAG CAGGATGGAGAAACCAGAACTGTTTCATGGAATTCTATGA
AA sequence Show only first row Show all	>Lus10016772 pacid=23149116 polypeptide=Lus10016772 locus=Lus10016772.g ID=Lus10016772.BGIv1.0 annot-version=v1.0 MPPLSTLIQYCTIVTSLKKARQLHALILATTTCANYALSPYVNNNIVSMYGRCGSLSEAHQVFDRMPVRTTVSYNALIAAYSKEPGLEIRCFQLFQDMRG EGMMPSGSTFVSLLQACYGLEDWVIGSLIHGQVVKFDGLDNVSLQTSLLGMYSNCENLKSAYRIFEEVVVKDHVMWTAITFGLFKNEEIRAGLRLFNAML RSDVTPTQFTYSTMLNACAKFREYSVGRMIHSQVIVLGVPDDSKLQNTLIDMYSSCGDTGTAFDCFSRMEKPELFHGIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50420			Pentatricopeptide repeat (PPR)...		Lus10016772 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10033717 [exp]	20.1	0.7974
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10023110 [exp]	21.9	0.7846
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011473 [exp]	26.5	0.7826
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10033755 [exp]	34.9	0.7788
AT3G26782			Tetratricopeptide repeat (TPR)...		Lus10035157 [exp]	40.5	0.7181
AT4G19420			Pectinacetylesterase family pr...		Lus10034766 [exp]	79.2	0.7497
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10032980 [exp]	192.5	0.6895
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10019971 [exp]	200.0	0.6930
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022133 [exp]	210.2	0.6777
AT1G69630			F-box/RNI-like superfamily pro...		Lus10008245 [exp]	218.9	0.6781

Compare expression of checked genes

Lus10016772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.