Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50420 283 / 7e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 212 / 2e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02330 204 / 3e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 198 / 7e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 195 / 1e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37320 189 / 1e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 189 / 1e-55 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18485 191 / 4e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 190 / 5e-55 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G04780 182 / 5e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022469 [exp] 550 / 0 AT3G50420 720 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040577 [exp] 192 / 7e-59 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 195 / 1e-57 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 195 / 1e-57 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014956 [exp] 189 / 2e-57 AT5G13230 484 / 1e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 191 / 1e-55 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018978 [exp] 191 / 7e-55 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013149 [exp] 187 / 1e-54 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003325 [exp] 182 / 2e-54 AT2G41080 570 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G131800 [exp] 327 / 3e-108 AT3G50420 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 209 / 2e-61 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 203 / 1e-60 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 200 / 2e-58 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G075000 [exp] 197 / 3e-58 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 192 / 4e-57 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 195 / 5e-57 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G082200 [exp] 190 / 1e-56 AT2G37320 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 192 / 9e-56 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 191 / 3e-55 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016773 pacid=23149074 polypeptide=Lus10016773 locus=Lus10016773.g ID=Lus10016773.BGIv1.0 annot-version=v1.0 ATGATCCATTCCCAAGCCATAAAAACAGGATGTGATGCTGAATTGAATGCGTGCGGAAGTCTTCTCCATATGTATGCCAAAAACGGTGATTTTCAAGCTT GTCGGTCTGTGTTTTCGCAAGTTTTGCTCCCGGACTTAAAGTGTTGGAACTCGATGCTGGGTGGGTATGGTAACCATGGAATGCCAGGGGAGGCATTGAA ATTATTCGAGGAGATGTTAAAACACGGTGTGATGCCGGATAATGTGACGTTTCTTACCCTCTTGTCTGCCTGCAGCCATGGTGGCTTGTTAGAGGAAGGA ATGGTCTTGTGGAATTACATGAAGAAAAGTGGGATCGTCCCAGGTCCTAACCATTATTCTTGCATGGCAAGTTTACTTAGTAGAGCTGGATTGTTGGAGA ATGCTGAAGAGCTGATAGCTGAATCGCCTCATTCATTGGAGCATCTGGAGGTCTGGAGAACACTCCTTGGCGCTTGCGTAGAAAAGAGGAACATGTACAT GGGAATTCGAGCAGCAAAGCAGATATTCAGATTAGATCCTGACGACAGTGCAACACACATCCTTGTATCAAATCTGTATGCTGTGACAGGAACATGGAAC GGTGTTGCAGATACGAGGAAGAAAATGAGAGGAATGATGCTGGAAAAAGATCCCGGGTTAAGCTGGATCGAAGTCAAGCATGAAATTCACTCCTTCACTT CTGGTGACCAATCAAAGGGTGGGATTGAAGAAGCTCGATTAGAAGCGTGCAGATTGCAAGCTAACATTGCTAGATCTGAAACAGATGATCTTGATGAGAG GGTGTATCTGTCGTCGTTTGCCTATTAG
AA sequence Show only first row Show all	>Lus10016773 pacid=23149074 polypeptide=Lus10016773 locus=Lus10016773.g ID=Lus10016773.BGIv1.0 annot-version=v1.0 MIHSQAIKTGCDAELNACGSLLHMYAKNGDFQACRSVFSQVLLPDLKCWNSMLGGYGNHGMPGEALKLFEEMLKHGVMPDNVTFLTLLSACSHGGLLEEG MVLWNYMKKSGIVPGPNHYSCMASLLSRAGLLENAEELIAESPHSLEHLEVWRTLLGACVEKRNMYMGIRAAKQIFRLDPDDSATHILVSNLYAVTGTWN GVADTRKKMRGMMLEKDPGLSWIEVKHEIHSFTSGDQSKGGIEEARLEACRLQANIARSETDDLDERVYLSSFAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50420			Pentatricopeptide repeat (PPR)...		Lus10016773 [exp]	0	1
AT5G57300			S-adenosyl-L-methionine-depend...		Lus10000179 [exp]	5.3	0.6566
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	6.9	0.7351
AT3G23020			Tetratricopeptide repeat (TPR)...		Lus10021891 [exp]	8.1	0.7246
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10010720 [exp]	10.8	0.7180
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10021535 [exp]	14.2	0.6969
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	14.2	0.7316
AT2G17033			pentatricopeptide (PPR) repeat...		Lus10025090 [exp]	19.9	0.6766
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10043199 [exp]	36.0	0.7019
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10003657 [exp]	37.1	0.6571
AT3G23330			Tetratricopeptide repeat (TPR)...		Lus10019350 [exp]	37.9	0.6556

Compare expression of checked genes

Lus10016773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.