Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37130 382 / 5e-128 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022470 [exp] 496 / 3e-174 AT4G37130 455 / 4e-158 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036600 [exp] 403 / 2e-136 AT4G37130 424 / 4e-144 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016774 pacid=23149131 polypeptide=Lus10016774 locus=Lus10016774.g ID=Lus10016774.BGIv1.0 annot-version=v1.0 ATGGCGTTCTCATTTTCGACTCCACAGCAGCACAATACATCACTTTTCCAGCCTCAATCGCAACCTTTTCAGCAAAGCAGTCCTCTCTTTTCCCAGCAGC AGCAGCAACAACCTCAACAGCAGCCGCAGTATCAACAACAGCAGCAGCAGCAGCAGTTGTATCTTTTCACTAATGATAAAGCGCCTGCTACTTACAGCAC TAAATGGGCAGATCTTCATCCGGATTCCCAAAAACTGCTCCTCACAATCGAGGGGCGAATATTGGAGCACAGGGATGAGAGTCAGAGGCTGGATCAGTGT AGCCGTCTTTATGATTCTTCTGTTTTGAATGAAGGGTTCGAGCTTGATGCAAGCCATATTGTTCAGGAACTTGGCGGCATCAGTACTGCTATGGAAAGAC AAAAAGCTGTTCTACAAGAGCACATGGCCAACGTTAAAGACATGTTGAGGAATACAGAGATGGCTGTTCGCTCTTTCAGGATGCTTCGTCCGCGGTTCCT CCATTCTGCTACAGGGGGTTCTTCGAATGTTACTGCACCATCTCAGCCTTCTGGAGGAACAGGCGCACCAAGTTCTACTAGCCAGCCAATGTCTACTGCC ATAGCACCAGTATTTGATTTTTACAGTGGGCTTCCGAAAAAACCATCACCATTCCTAAATCAAACAGTTCTCAGATTTGAGAAGTACTTGGGTGAATGTC GACAGTGGATTGAAGAGTTAGAGCAACTGCTCCTTTTAGATTCCTACAGGAATTCTTCCCAGTCTGGATCCTCTTTATTACAGTCTCTCCCTAAAGTCAT GTCAAATGTGCATGACTTTTTCGTACATACAGCTGCGAAGGTTGAGAGCATCCATCAGTACATTGAATCTATGAGGGCAGCATACCTTGTTGACCAGCGA CGTCGAGGTGAAGGGAATGATCCATTTCTTGAGGCTGATCGTCGTGCATCTGCAAGACAAGAGGCTGCAGCTAAGCGAGTCCACCCAACTTCACATCTGC CTGCGAATTCTCAGCCTCCAAAGCAGGTTGCTGGGTTGCTTCCGAGCACAGTTGCACCTGCTGCATCAACTGCTCCCCAGACAGTGACGACAGCACCTGG AGCAGCATCTTCAGGAGCTGGGTTATCTCTTTTTGGTACTCCAGCTTCTGCACCATCATCATCTATGGCAGGAACTTCTTTATTCACAACTCCTGCAACA TCTGCTCCCACATCTTCTTTGTTCGGGCCATCTGGTGCTTCTCCACAGAGTTCATTGTTTGGTACTTCATCAGCATCATTGTTTGGTCCTGCTTCCACTC CATCATTGTTTTCCAATACTGCTTCAGCCTTTACCTCTACCACCCCTGCTGCTGGTACCCTATTTTCAACACCATTTCCTTCAGGTGCTGCAACGGGTTC TGGAGCTAGCTTCAGCAGTGCGTCTAGGTCAGCTAAGCCAAAATCTCGAACTGGCAGACGTTAG
AA sequence Show only first row Show all	>Lus10016774 pacid=23149131 polypeptide=Lus10016774 locus=Lus10016774.g ID=Lus10016774.BGIv1.0 annot-version=v1.0 MAFSFSTPQQHNTSLFQPQSQPFQQSSPLFSQQQQQQPQQQPQYQQQQQQQQLYLFTNDKAPATYSTKWADLHPDSQKLLLTIEGRILEHRDESQRLDQC SRLYDSSVLNEGFELDASHIVQELGGISTAMERQKAVLQEHMANVKDMLRNTEMAVRSFRMLRPRFLHSATGGSSNVTAPSQPSGGTGAPSSTSQPMSTA IAPVFDFYSGLPKKPSPFLNQTVLRFEKYLGECRQWIEELEQLLLLDSYRNSSQSGSSLLQSLPKVMSNVHDFFVHTAAKVESIHQYIESMRAAYLVDQR RRGEGNDPFLEADRRASARQEAAAKRVHPTSHLPANSQPPKQVAGLLPSTVAPAASTAPQTVTTAPGAASSGAGLSLFGTPASAPSSSMAGTSLFTTPAT SAPTSSLFGPSGASPQSSLFGTSSASLFGPASTPSLFSNTASAFTSTTPAAGTLFSTPFPSGAATGSGASFSSASRSAKPKSRTGRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37130			hydroxyproline-rich glycoprote...		Lus10016774 [exp]	0	1
AT3G58930			F-box/RNI-like superfamily pro...		Lus10002820 [exp]	12.6	0.7933
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	33.0	0.7662
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012906 [exp]	36.6	0.7640
AT4G24790			AAA-type ATPase family protein...		Lus10013665 [exp]	40.4	0.7649
AT5G15700			DNA/RNA polymerases superfamil...		Lus10005097 [exp]	45.4	0.7587
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034076 [exp]	52.0	0.7496
AT2G47210	MYB		myb-like transcription factor ...		Lus10003470 [exp]	58.2	0.6864
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10012876 [exp]	61.3	0.7519
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10016691 [exp]	66.4	0.7197
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10030207 [exp]	67.2	0.6957

Compare expression of checked genes

Lus10016774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.