Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23540 591 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 516 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 300 / 2e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G28780 260 / 5e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 258 / 2e-83 GLIP7 GDSL-motif lipase 7 (.1) AT5G37690 256 / 2e-82 SGNH hydrolase-type esterase superfamily protein (.1) AT3G04290 256 / 2e-82 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT5G08460 256 / 3e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G16230 246 / 4e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G18430 248 / 2e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022471 [exp] 749 / 0 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 387 / 2e-133 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005236 [exp] 386 / 4e-133 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005238 [exp] 374 / 2e-128 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 259 / 2e-83 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10016929 [exp] 253 / 5e-81 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10018641 [exp] 249 / 1e-79 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10034459 [exp] 246 / 7e-79 AT1G74460 546 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019095 [exp] 246 / 1e-78 AT1G74460 550 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036300 [exp] 616 / 0 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104600 [exp] 395 / 5e-137 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104700 [exp] 303 / 8e-101 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024600 [exp] 271 / 3e-88 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.008G216400 [exp] 263 / 6e-86 AT2G23540 240 / 1e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024800 [exp] 265 / 2e-85 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051100 [exp] 264 / 2e-85 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.012G068700 [exp] 258 / 7e-83 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 256 / 1e-82 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.002G253400 [exp] 255 / 3e-82 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10016775 pacid=23149117 polypeptide=Lus10016775 locus=Lus10016775.g ID=Lus10016775.BGIv1.0 annot-version=v1.0 ATGGCAATTCTGACAAGTTGGAGTGAAGTTATGAGGTTGGCAGCGTTGGGTGTATCAGTAATTATGAGCATGATCATGATTAATACGTTGGGTGCATTTG GAGAAGACGTTCCACTTGGTGCTTCTTTCATATTTGGGGATTCCTTGGTTGATGCTGGTAACAACAACTACCTATCCACTCTTTCCAAGGCTGATATTAA ACCTAATGGCATTGATTTCACGGCTTCCGGTGGCAGACCCACTGGCAGATACACCAATGGCAGAACCATTGGTGACATCGTCGGGGAGGAGCTTGGACAG CCAAACTATGCGTTGCCATTTCTGGCACCAAACACAACAGGGAAGGCCATCCTGTCAGGAGTCAACTATGCATCTGGAGGAGGAGGAATCATGAATGCTA CTGGAAGAATATTTGTTAACAGGCTGGGAATGGATGTTCAGATAGACTACTTCAACATCACCAGGAAACAAATAGATGAGGTTTTGGGGGCTTCAAAGGC TAGAGATTACATAATGAAGAATTCCATCTTCTCAATAACGGTTGGAGCCAATGATTTCCTAAACAACTACCTCCTTCCAGTTCTCTCCATTGGCGCCAGG ATTACGGAGAGCCCTGATGGTTTCATTGATGACATGCTCTCCCATTTCAGAGCTCAACTTACTAGGCTATACCAGATGGATGCTAGAAAGTTTGTGATTG GGAACGTTGGACCAATTGGTTGCATCCCATACCAGAAGACCATCAATCAGCTGCAGGAAAATGAATGCGTGGATTTGGCTAATAAGCTTGCTCTTCAGTA CAATGCCAGGTTGAAGGATTTGCTTGCCGAGTTGAACGACAATCTTCCAGGAGCCGTTTTTGTTCATGCTAATGTCTACGATTTGGTCATGGAACTCGTT ACTAATTTTGATAAATATGGTTTTACAACGGCTACAAGGGCATGTTGTGGAAATGGAGGGCAATTCGCAGGGATAGTACCATGCGGTCCAACTTCTAGTA TGTGCAAAGATCGTTCCAAGCATGTGTTTTGGGATCCATACCATCCCAGTGAGGCCGCAAATGTCATCATAGCCAAGCAGCTTTTGGATGGTGATACCAA GTACATGTCTCCCATGAATCTTAGGCAGCTTCGCAACCATTGA
AA sequence Show only first row Show all	>Lus10016775 pacid=23149117 polypeptide=Lus10016775 locus=Lus10016775.g ID=Lus10016775.BGIv1.0 annot-version=v1.0 MAILTSWSEVMRLAALGVSVIMSMIMINTLGAFGEDVPLGASFIFGDSLVDAGNNNYLSTLSKADIKPNGIDFTASGGRPTGRYTNGRTIGDIVGEELGQ PNYALPFLAPNTTGKAILSGVNYASGGGGIMNATGRIFVNRLGMDVQIDYFNITRKQIDEVLGASKARDYIMKNSIFSITVGANDFLNNYLLPVLSIGAR ITESPDGFIDDMLSHFRAQLTRLYQMDARKFVIGNVGPIGCIPYQKTINQLQENECVDLANKLALQYNARLKDLLAELNDNLPGAVFVHANVYDLVMELV TNFDKYGFTTATRACCGNGGQFAGIVPCGPTSSMCKDRSKHVFWDPYHPSEAANVIIAKQLLDGDTKYMSPMNLRQLRNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10016775 [exp]	0	1
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10022471 [exp]	1.0	0.9859
AT1G49960			Xanthine/uracil permease famil...		Lus10033773 [exp]	3.2	0.9707
AT1G24405			unknown protein		Lus10036923 [exp]	4.2	0.9610
AT1G24405			unknown protein		Lus10037061 [exp]	4.5	0.9591
					Lus10033897 [exp]	6.5	0.9462
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Lus10017609 [exp]	6.9	0.9425
AT1G68850			Peroxidase superfamily protein...		Lus10029094 [exp]	7.4	0.9502
AT5G61680			Pectin lyase-like superfamily ...		Lus10034893 [exp]	7.5	0.9184
AT4G20820			FAD-binding Berberine family p...		Lus10038436 [exp]	7.7	0.9323
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10013480 [exp]	9.5	0.9186

Compare expression of checked genes

Lus10016775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.