Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23520 1153 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G37100 1137 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G66950 1037 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G51920 300 / 3e-91 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G22980 218 / 3e-61 unknown protein AT1G16540 72 / 2e-12 ACI2, ABA3, SIR3, LOS5, ATABA3 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022472 [exp] 1733 / 0 AT2G23520 1238 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10019650 [exp] 1321 / 0 AT4G37100 1186 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000751 [exp] 1271 / 0 AT4G37100 1141 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10038892 [exp] 275 / 2e-81 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10015013 [exp] 271 / 6e-80 AT5G51920 570 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10006342 [exp] 250 / 2e-71 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10002958 [exp] 220 / 7e-61 AT5G51920 396 / 5e-130 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022447 [exp] 81 / 6e-16 AT2G23520 96 / 1e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016752 [exp] 81 / 8e-16 AT2G23520 96 / 5e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036100 [exp] 1434 / 0 AT2G23520 1236 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G131300 [exp] 1402 / 0 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G137900 [exp] 298 / 2e-89 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G111600 [exp] 275 / 6e-81 AT4G22980 431 / 2e-144 unknown protein Potri.003G120500 [exp] 274 / 1e-80 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G097000 [exp] 84 / 5e-17 AT4G37100 97 / 9e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.012G098200 [exp] 81 / 4e-16 AT4G37100 95 / 4e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G066400 [exp] 81 / 3e-15 AT1G16540 1071 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Potri.003G172100 [exp] 77 / 1e-14 AT5G51920 91 / 1e-19 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G056400 [exp] 54 / 5e-08 AT5G51920 59 / 1e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016776 pacid=23149144 polypeptide=Lus10016776 locus=Lus10016776.g ID=Lus10016776.BGIv1.0 annot-version=v1.0 ATGCATCTGTCACTTTGGAAGCCCATTTCTCACTGCGCTGCTCTAATTCTGGACAAGAAGAGCAGGAGGAGAGATGGGTCCGAATCCGATGTTGAAGTCA AAAGGAATCCTTCAGTTCTCAGGAAACTTCAAGAACACAAGCTCAGGGAGGCCCTGGAGGAAGCTTCCGAGGATGGCTCGCTCTTCAAATCCAAGGACAT GGATTCCGACTCAGCTTCTAACCTAGACGATACTCTTGGCCGATCGAGATCCTTGGCAAGGCTTCACGCCCAACGAGAGTTTCTTCGAGCTACGTCTCAT GCTGCTGATCGTGTATTCCAGACTCCTGATTCTATCCCTGACCTCCATGAATCCTTCTCCAAGTTCCTCACTATGTATCCTAAGTATGAGTCTTCCGACA AGGTTGATGAGTTGAGGTCAGATGAATATGGCCATCTGTCTCCTAAGGTATGTCTTGATTACTGTGGATTTGGCCTCTTCTCCTACCTCCAGACTTTGCA TTACTGGGGATCTTCCACCTTTAGCTTGTCCGAGATCACTGCAAATTTGAGCAATCATGCTCTTTATGGTGGTGCCGACAAAGGCACCGTTGAGCATGAT ATCAAGACCAGGATAATGGATTATTTGAACATCCCTGAGAACGAGTATGGTCTTGTTTTCACTGTTAGTAGAGGTTCTGCTTTTAAATTGCTTGCAGAAT CATACCCTTTTCATACCAACAAGAAGTTGTTGACTATGTTTGATTACGAGAGTCAGTCTGTGAATTGGATGGCTCAGTGTGCCAAGGACAAGGGTGCAAA AGTTCATAGTGCTTGGTTCAAATGGCCAACTCTTAAACCCTGTTCAACTGATTTGAGGAAGCAAATTTCAAACAAGAAAAAGCGTAAAAAGGATGCTGCC ACTGGTTTGTTTGTGTTCCCTGTACAGTCGAGGGTTACTGGAGCTAAATATTCATACCAGTGGATGGCACTTGCCCAACAGAACAATTGGCATGTGTTGC TTGATGCTGGCTCATTAGGTCCAAAAGATATGGATTCACTTGGTTTATCATTGTTTCGCCCTGATTTCATTATAACCTCCTTTTACAGGGTGTTTGGGTA TGATCCTACTGGCTTTGGATGTCTTGTTATTAAGAAGTCTGTTATGTCAAGTCTTCAGCATCGTTCTGGAAGTACAGGGTCTGGCATTGTGAAGATAACG CCCGAGTATCCTCTGTATTTGAGTGATTCTGTAGATGGTCTGGATGGATTGGGTGGGGTTGAAGATGATGATGAAATTATTGGGAATGACGAAAAAACTA GTGAAACACATCCAGGAACCCAGTTGCCTGCATTCTCTGGGGCATTTACATCTGCTCAAGTGAGGGATGTATTTGAGACTGAGATGGAGCATGACAACAA TTCAGATAGAGATGGAACAAGCACTATATTTGAAGAAGTGGAGAGCATCTCAATTGGAGAAGTGATGAAAAGCCCCGTCTTCAGTGAAGATGGATCATCC GACAATTCCTTTTGGATTGATTTGGGTCAGAGTCCTTTGGGGTCTGATTCTGCAGCCCAATTGACAAAACAGAAATCCGCCTCTCCGCTGCCTCCTTTCT GGTTCTCCAGCAAGAAGAACCACAAGAAGCAAACGTCAAAGATCTACGGCAGTCCACTGTATGATGACAAGGGAGTGAACTTACATGATGATAATCAGGC ATTGTCATTTGATGCGGCAGTTCTATCAGTTTCTCAGGAACTGGACTGGGTTAAGGAGGTTCCTGATGAAGAGGAGCAGTATGCTCAGTCAAACCTACGC AATGGTCTGAATCATATGCATGTTTCTGAAATTGAAGAAGAACCAGTAAATGGATTTCCATCCAGCTCTCATATCAACAATTCAAATTCTTCGCAACATC AATGCCTTGAAAATGGTTCAGATAAAAAGGAGAGTGCTATAAGAAGAGAAACAGAAGGTGAATTTCGGTTGTTGGGGAGAAGGGAAGGGAGCAGATATGG TGGTGGTGGTGGTGGTGGTAGATTCTTTGGCGTCGATGAGAATGAACATCCAAGCAAGGGAAGAAGGGTATCATTTAGCATGGAGGAGAGTTGCAAAGAA CATCTTAACCACACATTCGAGCCAGGGGAAGTATCTGTAGCCACTTTGGATGATGATGAATACACCAGCGATGGCGAATTTGGTGATGGTCAAGATTGGG ACAGGAGAGAACCTGAGATAACTTTGCGTCATTTAGACCATGTCAATATGTTGGGTCTCAATAAAACGACTCTTAGGCTGAGGTATTTAATCAACTGGCT AGTAACCTCGTTGCTGCAACTAAGATTATCCAATTCCAATGCTGAAGGAGAAGGAGTGCATCTGGTTCACATATATGGACCGAAAATAAAGTACGAGAGA GGTGCTGCTGTAGCTTTCAACGTTCGAGACAGAAACCAGGGGCTTGTGAATCCTGAAGTTGTTCAGAGGCTAGCTGAAAAGGAAGGTATTTCTCTTGGGA TCGGCTTCCTCAGTCACATACGAATTGTGGATAGCCCAAGACAACACAAGGGTGGTTTGAACCCTGAAGACACCAGCCTTTGCATGCCAATGGATAATGG GCAGTTCAATGGAAAAACTGGCTTCATAAGAGTGGAGGTTGTCACAGCTTCATTGGGATTTCTTACTAACTTTGAAGATGTGTACAAGTTGTGGGCTTTT GTTTCCAAGTTTCTTAATCCCACTTTTACAAGGGAAGGTAGCCTTCCTACTGTTGAAGAAGAAGAAGGCGAAGAAACGTGA
AA sequence Show only first row Show all	>Lus10016776 pacid=23149144 polypeptide=Lus10016776 locus=Lus10016776.g ID=Lus10016776.BGIv1.0 annot-version=v1.0 MHLSLWKPISHCAALILDKKSRRRDGSESDVEVKRNPSVLRKLQEHKLREALEEASEDGSLFKSKDMDSDSASNLDDTLGRSRSLARLHAQREFLRATSH AADRVFQTPDSIPDLHESFSKFLTMYPKYESSDKVDELRSDEYGHLSPKVCLDYCGFGLFSYLQTLHYWGSSTFSLSEITANLSNHALYGGADKGTVEHD IKTRIMDYLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQCAKDKGAKVHSAWFKWPTLKPCSTDLRKQISNKKKRKKDAA TGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGYDPTGFGCLVIKKSVMSSLQHRSGSTGSGIVKIT PEYPLYLSDSVDGLDGLGGVEDDDEIIGNDEKTSETHPGTQLPAFSGAFTSAQVRDVFETEMEHDNNSDRDGTSTIFEEVESISIGEVMKSPVFSEDGSS DNSFWIDLGQSPLGSDSAAQLTKQKSASPLPPFWFSSKKNHKKQTSKIYGSPLYDDKGVNLHDDNQALSFDAAVLSVSQELDWVKEVPDEEEQYAQSNLR NGLNHMHVSEIEEEPVNGFPSSSHINNSNSSQHQCLENGSDKKESAIRRETEGEFRLLGRREGSRYGGGGGGGRFFGVDENEHPSKGRRVSFSMEESCKE HLNHTFEPGEVSVATLDDDEYTSDGEFGDGQDWDRREPEITLRHLDHVNMLGLNKTTLRLRYLINWLVTSLLQLRLSNSNAEGEGVHLVHIYGPKIKYER GAAVAFNVRDRNQGLVNPEVVQRLAEKEGISLGIGFLSHIRIVDSPRQHKGGLNPEDTSLCMPMDNGQFNGKTGFIRVEVVTASLGFLTNFEDVYKLWAF VSKFLNPTFTREGSLPTVEEEEGEET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10016776 [exp]	0	1
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10022472 [exp]	1.0	0.8549
AT2G17550			unknown protein		Lus10016693 [exp]	6.3	0.7940
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10011814 [exp]	9.8	0.8014
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10032361 [exp]	10.9	0.8085
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10002633 [exp]	13.9	0.7779
AT5G42620			metalloendopeptidases;zinc ion...		Lus10016304 [exp]	18.4	0.7176
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10017160 [exp]	19.2	0.7830
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10031066 [exp]	19.8	0.7695
AT1G63300			Myosin heavy chain-related pro...		Lus10014980 [exp]	23.2	0.7672
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10039151 [exp]	28.9	0.7648

Compare expression of checked genes

Lus10016776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.