Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18960 79 / 3e-17 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 78 / 6e-17 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 74 / 1e-15 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 68 / 1e-12 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49480 56 / 9e-09 B3 REM19, RTV1 related to vernalization1 1 (.1) AT5G66980 45 / 3e-05 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G26680 44 / 0.0001 B3 REM17 transcriptional factor B3 family protein (.1) AT4G31640 44 / 0.0001 B3 REM5 transcriptional factor B3 family protein (.1) AT3G53310 43 / 0.0001 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT4G31690 43 / 0.0003 B3 REM9 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022473 [exp] 384 / 9e-134 AT3G18990 78 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 154 / 6e-44 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 151 / 1e-42 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025534 [exp] 91 / 8e-21 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 88 / 1e-19 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002934 [exp] 88 / 4e-19 AT3G18990 112 / 5e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010756 [exp] 81 / 5e-17 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025506 [exp] 77 / 8e-17 AT3G18990 79 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10038189 [exp] 79 / 2e-16 AT3G18990 82 / 8e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 130 / 2e-33 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 121 / 5e-31 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 79 / 3e-16 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.014G057101 [exp] 77 / 3e-16 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 76 / 5e-15 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 70 / 7e-14 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 71 / 2e-13 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 58 / 3e-09 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 52 / 2e-07 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 45 / 7e-05 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10016777 pacid=23149105 polypeptide=Lus10016777 locus=Lus10016777.g ID=Lus10016777.BGIv1.0 annot-version=v1.0 ATGACTTCTTCCGGTGAGCAGATTCGCCAAGATGATTGCGGGGAAAGATTAATCGGAACCCGCTTCTTCAAAATCATTCTTGACGAAACTATTCGACACA AGAAGCTTTTGATTCCCGGGAAGTTCATTCAGAAATATGGGCAGGGTTTGGTGAACTTTGCAATTTTAAAGGTCCCAAGTGGAGTAAAGTGGGTGGTGAG TGTAGTGAGGGATGAAATTGGAGTGTGGTTGAGCGATGGATGGCATGAATTTGTTGAATCTCACTCATTGGAACATGGCCATTTTCTGGTTTTCGAGTAT GAGGAGGGTTCTTCCAGCTTCTCTGTTGTTATCTGCGATAAAACTGCTACTGAAATTGCGTATCCAAAGAAGCAGCAGCAGCCTGATGAAGGGGGTGACA AACTATTTCCTCTACTAAAACTCCAACAATGTGAAGAAGAAGAAGAAGCATTTGATCATCGAGATGATGATGATCTAGCCCCGGTTAACAAGGATAAATC CCCAATGGAGGTTTCTCCACCTCTGAAGAAGATGAGGGGCAGCGTAACTCATGTAAATGCTACTCGAGTGCAGATGAGGAATTGCAACTTTCAAATTCCG CAAAGTCCTCTTCAGTCCTCAGCGGGACAAGGCCTTGTGGACAATGTGATGAAGTTGGCATTGAAAGATGATAAGAAAGAGGGGGGTGCAGATGATAAGA GGATGATGTATGATGATAAGAAACCGCATGCGCCAATGCCTGAATTCTCATCACAACATCCATTTTTCTTCATCGAAATAACTTCCAAAATGCTCACAAG GAAGGACCTGTATGTACCCGTAAGCTTTTCGACTAATCATATTGGGAAAGATGACAAGTCAGTGAAGCTCCAGGTTTGTGATAAAACTTGGTCTGTGGCG CTAATGAGATACTCCAAGTATGTATACTTCACCGATGACTGGAATCTATTTATCAATGAAAACTCGCTGAAACCAGGAGACGTTTGTATCTTTGAGTCCG TCCAAAGGATGCTGCTCAATGTCACCATTTTCAGGGGATGTGTATTACCTGCTGCATGTTAA
AA sequence Show only first row Show all	>Lus10016777 pacid=23149105 polypeptide=Lus10016777 locus=Lus10016777.g ID=Lus10016777.BGIv1.0 annot-version=v1.0 MTSSGEQIRQDDCGERLIGTRFFKIILDETIRHKKLLIPGKFIQKYGQGLVNFAILKVPSGVKWVVSVVRDEIGVWLSDGWHEFVESHSLEHGHFLVFEY EEGSSSFSVVICDKTATEIAYPKKQQQPDEGGDKLFPLLKLQQCEEEEEAFDHRDDDDLAPVNKDKSPMEVSPPLKKMRGSVTHVNATRVQMRNCNFQIP QSPLQSSAGQGLVDNVMKLALKDDKKEGGADDKRMMYDDKKPHAPMPEFSSQHPFFFIEITSKMLTRKDLYVPVSFSTNHIGKDDKSVKLQVCDKTWSVA LMRYSKYVYFTDDWNLFINENSLKPGDVCIFESVQRMLLNVTIFRGCVLPAAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10016777 [exp]	0	1
AT5G51030			NAD(P)-binding Rossmann-fold s...		Lus10043023 [exp]	15.0	0.6786
AT3G26700			Protein kinase superfamily pro...		Lus10012585 [exp]	22.8	0.6323
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022927 [exp]	26.4	0.6188
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Lus10013000 [exp]	29.2	0.6386
AT1G68330			unknown protein		Lus10041430 [exp]	30.6	0.6234
AT1G53035			unknown protein		Lus10018600 [exp]	32.4	0.6402
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10026948 [exp]	37.3	0.6407
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027322 [exp]	44.0	0.5954
AT2G23640		RTNLB13	Reticulan like protein B13 (.1...		Lus10039905 [exp]	48.4	0.6292
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10015476 [exp]	53.3	0.5662

Compare expression of checked genes

Lus10016777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.