Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23470 557 / 0 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) AT5G49820 131 / 6e-33 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT2G31190 120 / 2e-29 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT1G13770 110 / 4e-26 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT3G45890 111 / 8e-26 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT5G01510 102 / 5e-23 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022474 [exp] 999 / 0 AT2G23470 566 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10010692 [exp] 144 / 2e-37 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10038136 [exp] 144 / 2e-37 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10003558 [exp] 119 / 7e-29 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10001047 [exp] 120 / 1e-28 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10001413 [exp] 118 / 4e-28 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10033888 [exp] 115 / 9e-28 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10036909 [exp] 107 / 9e-25 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10037076 [exp] 82 / 2e-16 AT1G13770 583 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G035300 [exp] 676 / 0 AT2G23470 591 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Potri.004G229500 [exp] 130 / 1e-32 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.005G224000 [exp] 117 / 3e-28 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.001G193300 [exp] 115 / 3e-27 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.008G095700 [exp] 103 / 8e-24 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.006G099700 [exp] 79 / 3e-15 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) Potri.002G038600 [exp] 68 / 2e-12 AT2G31190 333 / 1e-113 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [flax] [poplar] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Lus10016778 pacid=23149166 polypeptide=Lus10016778 locus=Lus10016778.g ID=Lus10016778.BGIv1.0 annot-version=v1.0 ATGCAATCGGCGTTATTCTCTTCTGTGAGCTCACGTCAGCTCTGCTTTCCATGGAAATCCGATGAGTTATACCAGAAACCTTTTCCTCCCAAAAGCTTGA CTTTGACGAGCTCTTTAAGGACCTCAATTAATTATGGACCGGAAGAAGGTATCGGCAAGGGTCCTTCCGAAACCGGAGCTGTTTATCCGTCTAAGCTCCC AGTGGGGGTCAGGAAATCGGGTGGGGTGTCCAGGTACATATGGGATGGGAGTTGTTTGAGCTTAGAAAGTGTAGATGGCGGCAAGGCGGCGGCTTTGAGT TTTGATTTTGGAGATGGGTTTCGGACACTGTTTCGGGGTTGTAGTTTAGCGGTAAAAGATGTGTTTGTTCCCAAACGAGTTCCTGATAATTACATGCAGT ATGTGAAATGGAAACTGTTGCACCGGGTTTTCAGCTCTGCTTTACAGGTCCTCGCCACTCAGGCCATGTTTCGGGCTATTGGCATCGGGTTTTCTCGATC ACTTCCATCAGCAGCTGCTTTCAATTGGGTCTTGAAGGACGGGCTCGGTCGCCTCTGCAGGTGCATCTACACTGCAACCCTGGCTTCTGCATTTGATACA AATTTGAAGAGGGTTAGGTTCTTGACGTCTGTTGTGTTCAGTCTAAGCATTGGAGTGGAGCTGCTGACCCCTGTATTTCCCCACTACTTCCTGCTTCTCG CCACTTTGGCTAACATCGCCAAACAAATTAGCTTGGCATGTTACTTAGCTACCAGTTCTGCTGTTCATCGAAGTTTTGCTGTTGCAGATAACCTTGGCGA AATTTCTGCAAAAGCACAGATACAGTCAGTGTGCTTTGACAATCTTGGACTCCTGTTTGCTGCAACCTTGAACATATTGTTCAAGAACAACCAAAAGTTG CTTACAAGTCTACCATTTATAGTCTACCCAATTTTCGCAGCTATTGATGTTTTCGGGATATATCAAGGGCTTCAGCATGTCCATTTACAGACATTGACCA AGGATAGACTTGAAATTATACTAGACACATGGATTGAAGTGGGAAATGTGCCATCACCTGCCCAAGTGAGTAAGAAGGAAGGGGTGGGTATTTTTGGGAG CACAAGGAAGAAGTCATGGCCCATCAGGATTGGTTGTTTAACTGTTGATCAGCACGTACCAAAATTGTCAATGATGGTAATGCAATCTTTAGGCAGTGAG GACTATTACTTCATTTGTATGGAGAAGGCCGGTGGAGGATTTCTACAAACCAAACAACCTGGTATTGTACTTTGCTTCCGTGAAGGGGCTGGCACTAGCG ATGTTACAATGGGTTTGTTGCAGGCATGCTACATCCGTAAAGCCCTCGGGGACAGCAATCCTTCAGACTTGATTGTGATGCAGTGGCATAAGCTGTTGGA GGATACCAAGATCTCAGCAGTGAAGAGTTTGAACCTGGTAAATGATCAAATGGCAGAACTTGGTTGGGGCCTCAAGAACATATTACTCGGTTCAGGGGAG CAGGCTAGGTACAGTTTCATAGATGATTGA
AA sequence Show only first row Show all	>Lus10016778 pacid=23149166 polypeptide=Lus10016778 locus=Lus10016778.g ID=Lus10016778.BGIv1.0 annot-version=v1.0 MQSALFSSVSSRQLCFPWKSDELYQKPFPPKSLTLTSSLRTSINYGPEEGIGKGPSETGAVYPSKLPVGVRKSGGVSRYIWDGSCLSLESVDGGKAAALS FDFGDGFRTLFRGCSLAVKDVFVPKRVPDNYMQYVKWKLLHRVFSSALQVLATQAMFRAIGIGFSRSLPSAAAFNWVLKDGLGRLCRCIYTATLASAFDT NLKRVRFLTSVVFSLSIGVELLTPVFPHYFLLLATLANIAKQISLACYLATSSAVHRSFAVADNLGEISAKAQIQSVCFDNLGLLFAATLNILFKNNQKL LTSLPFIVYPIFAAIDVFGIYQGLQHVHLQTLTKDRLEIILDTWIEVGNVPSPAQVSKKEGVGIFGSTRKKSWPIRIGCLTVDQHVPKLSMMVMQSLGSE DYYFICMEKAGGGFLQTKQPGIVLCFREGAGTSDVTMGLLQACYIRKALGDSNPSDLIVMQWHKLLEDTKISAVKSLNLVNDQMAELGWGLKNILLGSGE QARYSFIDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10016778 [exp]	0	1
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030177 [exp]	2.0	0.7762
AT3G13225			WW domain-containing protein (...		Lus10010579 [exp]	4.2	0.7287
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	5.3	0.7334
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10022474 [exp]	5.8	0.6796
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10025863 [exp]	10.0	0.6756
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10028445 [exp]	20.0	0.7087
AT5G03450			Transducin/WD40 repeat-like su...		Lus10026534 [exp]	27.4	0.7001
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	31.0	0.7132
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026892 [exp]	31.0	0.7151
AT5G57950			26S proteasome regulatory subu...		Lus10022151 [exp]	37.6	0.6696

Compare expression of checked genes

Lus10016778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.