Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50390 435 / 2e-148 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 383 / 2e-128 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 371 / 3e-123 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 362 / 4e-120 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 352 / 3e-116 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 342 / 8e-114 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 168 / 1e-46 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 160 / 7e-44 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 157 / 6e-43 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 149 / 1e-39 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022475 [exp] 703 / 0 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 414 / 8e-141 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 404 / 1e-136 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 395 / 2e-133 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021014 [exp] 306 / 1e-98 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027944 [exp] 303 / 2e-97 AT3G18950 459 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012036 [exp] 298 / 4e-95 AT3G18950 463 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023836 [exp] 290 / 4e-91 AT3G18950 431 / 3e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011699 [exp] 171 / 7e-47 AT3G50390 256 / 5e-80 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G131100 [exp] 489 / 1e-168 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 474 / 7e-164 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 418 / 5e-142 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 410 / 2e-138 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 406 / 6e-137 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 402 / 7e-136 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 179 / 7e-50 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 169 / 6e-47 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 168 / 1e-46 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G202700 [exp] 157 / 1e-42 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10016779 pacid=23149043 polypeptide=Lus10016779 locus=Lus10016779.g ID=Lus10016779.BGIv1.0 annot-version=v1.0 ATGGCTCTGCACTTCTCAAAACAAGCTGCACATGAGAGTTTCATGACTAACGATGGAACCTCTAACTCCTCCTCCTCCTCCTCAGAAGATGAGAGTTTTG ACAGTGCTATAACTAAGATTAGTCCCATGACAATTAGCAGCCAGCTGGTCCTGTTAAAGAAGTCATCTTCAGAAGCTCAACCACTGGACAAGGGTGTGGT CCTCAGACGTATCAGGCAGCATAGGAGCTTGAACTGGCTCAGAAACTCTATCCAAACCCTCCACTCAGCTGATCCACACAACAACATGTGGCTCCACCCG GATAATGATGCCTTCTCTTCTCCCATCGCAGCATTCAATGTTTCTATACCACCACATGACAACGATGATGATTGTCAAGTTGAGGTTGTAAATTCATCAT CATCATCATCATCTGTACAGAAACCACATCGAAAGCCTCCAAGACACAGAGCATTATCATTGCCCACATCAACCGCCTCTTCTTCATATGTATCTTCTCT AGAGCATTGTTCATTTAATGCAATGGATTACTCACCTCCAGCTAATGATTTGTCTAATGTCCCATCTCCATTAACCAACTCTCCTTGGTCGTCTCATATG AATCTCAATGTTCTTCCAGATGAAGGTGATGATAATGACGATCAGTTTTGCCCCAATGTGTTGTTGGGTTCGTTGGTCCGTGAAGAAGGCCACATTTATT CGTTAGCGGCATCTGGAGACCTTCTCTACACCGGCTCTGACAGCAAGAATATCCGGGTTTGGAAGAACCACCGAGAGTTCTCTGGGTTCAAATCAAATAG TGGGTTGGTGAAGGCGATAATCATATACGAGGACAAGATTTTCACAGGTCATCAGGATGGAAAAGTTCGGGTGTGGAAAGTTTCTTCCAAGAACCCTACT GTTCATAAACGGGTTGGTACTTTACCAACTCTGAAAGACGTGGTAAAAAACTCAATCAAACCCAGCAATTACATCAACGAAGCGAGGCGGAACAAGAATT TCCTTTGGTTGAAGCACTTTGATGCGATTTCCTGCCTTGGGATTAGCGAGGACGATGGCAGCGTGAAGGTATGGCGGAGGGAATTACAAGGGAAAGGAAC AAAGCACTTCTTTTCACAGACGTTGCTTAAGCAAGAGTGTGCCATAACGGCCCTAGCGGTGAACCCACCGGATGCGACGATCGTGTACTGTGGATCCTCC GACGGGCTTGTCAATTTCTGGGAGAGGGATACACAATTGTCCCATGGTGGTGTTCTGAGAGGGCATAAATTGGCAGTGCTGTGTTTGGTCGCTGCTGGAA GCCTTGTGTTCAGCGGGTCTGCCGATATGGGGATTTGTGTATGGAGGAGGAATGGAATGGAGCATGTTTGTTTATCACAGTTAACTGGTCATACAGGGCC AGTCAAGTGCTTGGCGGTGGAGGAGGATCAGATGCCTGCTACTACAATGGCGGGTGGTGGGAGGGCCTGGACTTTATATAGCGGGAGTCTTGATAAGTCT GTGAAAATGTGGAGAGTATCAGAGCAAGCACCACCAATAGGGTGGAATAATAATGGGGGTTCAACTACTGGAAATACTAAACCAACAGCATCAATATTAA CAATGGCTCCCACTTTCTCTTCTCAAGGAAACAGGATTAGTGAAGCAAAAAATTAA
AA sequence Show only first row Show all	>Lus10016779 pacid=23149043 polypeptide=Lus10016779 locus=Lus10016779.g ID=Lus10016779.BGIv1.0 annot-version=v1.0 MALHFSKQAAHESFMTNDGTSNSSSSSSEDESFDSAITKISPMTISSQLVLLKKSSSEAQPLDKGVVLRRIRQHRSLNWLRNSIQTLHSADPHNNMWLHP DNDAFSSPIAAFNVSIPPHDNDDDCQVEVVNSSSSSSSVQKPHRKPPRHRALSLPTSTASSSYVSSLEHCSFNAMDYSPPANDLSNVPSPLTNSPWSSHM NLNVLPDEGDDNDDQFCPNVLLGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNHREFSGFKSNSGLVKAIIIYEDKIFTGHQDGKVRVWKVSSKNPT VHKRVGTLPTLKDVVKNSIKPSNYINEARRNKNFLWLKHFDAISCLGISEDDGSVKVWRRELQGKGTKHFFSQTLLKQECAITALAVNPPDATIVYCGSS DGLVNFWERDTQLSHGGVLRGHKLAVLCLVAAGSLVFSGSADMGICVWRRNGMEHVCLSQLTGHTGPVKCLAVEEDQMPATTMAGGGRAWTLYSGSLDKS VKMWRVSEQAPPIGWNNNGGSTTGNTKPTASILTMAPTFSSQGNRISEAKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50390			Transducin/WD40 repeat-like su...		Lus10016779 [exp]	0	1
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10030534 [exp]	1.0	0.9902
AT5G25940			early nodulin-related (.1)		Lus10030052 [exp]	1.4	0.9885
AT3G14880			unknown protein		Lus10042453 [exp]	2.6	0.9820
					Lus10002596 [exp]	3.5	0.9876
					Lus10018421 [exp]	4.0	0.9868
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10008214 [exp]	5.0	0.9868
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	7.3	0.9827
AT3G05550			Hypoxia-responsive family prot...		Lus10033002 [exp]	7.5	0.9658
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10015028 [exp]	8.4	0.9729
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10038904 [exp]	8.5	0.9809

Compare expression of checked genes

Lus10016779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.