Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37200 296 / 1e-101 HCF164 HIGH CHLOROPHYLL FLUORESCENCE 164, Thioredoxin superfamily protein (.1) AT1G43560 57 / 4e-10 ATY2 thioredoxin Y2 (.1) AT1G76760 56 / 1e-09 ATY1, TRX-Y1 thioredoxin Y1 (.1) AT1G50320 56 / 2e-09 ATHX, ATX thioredoxin X (.1) AT2G15570 52 / 5e-08 TRX-M3, GAT1, ATHM3, ATM3 THIOREDOXIN-M3, GFP ARRESTED TRAFFICKING 1, Arabidopsis thioredoxin M-type 3, Thioredoxin superfamily protein (.1.2) AT3G15360 52 / 5e-08 ATHM4, ATM4, TRX-M4 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) AT5G06430 52 / 6e-08 Thioredoxin superfamily protein (.1) AT2G47470 52 / 2e-07 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G21750 51 / 4e-07 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G19730 47 / 1e-06 ATTRX4, ATH4 thioredoxin H-type 4, Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022477 [exp] 445 / 2e-160 AT4G37200 298 / 2e-102 HIGH CHLOROPHYLL FLUORESCENCE 164, Thioredoxin superfamily protein (.1) Lus10018875 [exp] 57 / 5e-10 AT1G76760 176 / 6e-57 thioredoxin Y1 (.1) Lus10028569 [exp] 57 / 6e-10 AT1G76760 174 / 3e-56 thioredoxin Y1 (.1) Lus10036337 [exp] 58 / 2e-09 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10010274 [exp] 57 / 2e-09 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10014798 [exp] 56 / 3e-09 AT3G15360 181 / 2e-58 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10040887 [exp] 55 / 5e-09 AT3G15360 182 / 4e-59 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10029755 [exp] 52 / 3e-08 AT3G15360 162 / 3e-51 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10042784 [exp] 52 / 4e-08 AT3G15360 165 / 4e-52 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G034400 [exp] 318 / 4e-110 AT4G37200 305 / 5e-105 HIGH CHLOROPHYLL FLUORESCENCE 164, Thioredoxin superfamily protein (.1) Potri.013G132200 [exp] 57 / 7e-10 AT4G03520 173 / 4e-55 Thioredoxin superfamily protein (.1.2) Potri.002G073000 [exp] 56 / 2e-09 AT4G03520 152 / 6e-47 Thioredoxin superfamily protein (.1.2) Potri.014G035300 [exp] 56 / 4e-09 AT5G06430 251 / 1e-85 Thioredoxin superfamily protein (.1) Potri.011G120700 [exp] 55 / 4e-09 AT3G15360 190 / 1e-61 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Potri.005G193400 [exp] 54 / 6e-09 AT1G76760 198 / 2e-65 thioredoxin Y1 (.1) Potri.007G074000 [exp] 54 / 7e-09 AT1G50320 201 / 3e-66 thioredoxin X (.1) Potri.005G186800 [exp] 54 / 1e-08 AT4G03520 152 / 3e-47 Thioredoxin superfamily protein (.1.2) Potri.002G066800 [exp] 54 / 1e-08 AT1G76760 192 / 2e-63 thioredoxin Y1 (.1) Potri.009G100700 [exp] 53 / 1e-08 AT2G15570 193 / 2e-63 THIOREDOXIN-M3, GFP ARRESTED TRAFFICKING 1, Arabidopsis thioredoxin M-type 3, Thioredoxin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10016780 pacid=23149056 polypeptide=Lus10016780 locus=Lus10016780.g ID=Lus10016780.BGIv1.0 annot-version=v1.0 ATGGCTAATGTGGCTACCAGCACCATCCACACAGGTCGGCCCCATTTTCTCTACACCGGCAAATCCCGATCGCAGCCGCCGGCGAAAGTCATCTACCATC ACCTAGGAAAATCCCGGAAGTCTTTCCCGGTCACAGCTTGCGAAACCAAATCCAACGGATCCACCGAGAGTGAGGAAAAAGAGGCTGCAGAGGCCTCTCC TTCCTCTTCCGAATCTTCTGGATTACCTGAATTTCCGACTAGGAATCTGAATAGGCGGATAGCAGTGGGTTCAGGAGTGGTGGGCGTTGGTCTCTTCTTG TCCCGTCGGCTAGATTTTGGTGTTTCCCTTAAAGATTTATCGGCCGCTGCATTGCCTTACGAAGAGGCTCTCACAAACGGGAAGCCAACGGTTGTGGAAT TCTACGCAGATTGGTGCGAAGTTTGCCGAGAGTTAGCCCCAGATGTGTACAAAGTTGAGCAGCAGTATAAGGACCGGGTGAATTTTGTGATGCTGAATGT TGACAACACTAAATGGGAACAAGAGCTTGATGAGTTTGGGGTCGAGGGGATCCCACATTTTGCATTCCTGGATAGAGATGGGAATGAAGAGGGTAATGTT GTCGGGAAGCTGCCAAGGCGGTATCTCCTGGAGAACGTTGAGGCACTTGCTAGTGGGGAGGTAACTGTGCCTCATGCCCGCATGGTTGGGCAGTATTCAA GAGCCGAAGCTAGGAAAGTCCGTCCGGTTGTTGATCCTAGAAGCCATGGTTGA
AA sequence Show only first row Show all	>Lus10016780 pacid=23149056 polypeptide=Lus10016780 locus=Lus10016780.g ID=Lus10016780.BGIv1.0 annot-version=v1.0 MANVATSTIHTGRPHFLYTGKSRSQPPAKVIYHHLGKSRKSFPVTACETKSNGSTESEEKEAAEASPSSSESSGLPEFPTRNLNRRIAVGSGVVGVGLFL SRRLDFGVSLKDLSAAALPYEEALTNGKPTVVEFYADWCEVCRELAPDVYKVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDRDGNEEGNV VGKLPRRYLLENVEALASGEVTVPHARMVGQYSRAEARKVRPVVDPRSHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10016780 [exp]	0	1
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020418 [exp]	1.7	0.9522
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10015831 [exp]	5.5	0.9207
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037013 [exp]	7.9	0.8784
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10012297 [exp]	10.8	0.8990
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020415 [exp]	11.0	0.8909
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Lus10009181 [exp]	13.0	0.8732
AT4G28660		PSB28	photosystem II reaction center...		Lus10022867 [exp]	14.1	0.8900
AT3G47470		CAB4, LHCA4	light-harvesting chlorophyll-p...		Lus10021663 [exp]	15.1	0.8889
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035207 [exp]	17.7	0.7861
AT2G30570		PSBW	photosystem II reaction center...		Lus10018771 [exp]	19.6	0.8735

Compare expression of checked genes

Lus10016780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.