Plant FIBer expression Database

Lus10016781 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G23670 81 / 1e-19 YCF37 homolog of Synechocystis YCF37 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022478
[exp]
141 / 9e-44 AT2G23670 139 / 4e-43 homolog of Synechocystis YCF37 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G034300
[exp]
98 / 2e-26 AT2G23670 91 / 3e-23 homolog of Synechocystis YCF37 (.1)
PFAM info
Representative CDS sequence
>Lus10016781 pacid=23149113 polypeptide=Lus10016781 locus=Lus10016781.g ID=Lus10016781.BGIv1.0 annot-version=v1.0
ATGGCTGCCACGTCTGCGCAATCCTCTGCAGTCCAATCTCTCTCGTGTAACCTTCCTGGCAATGCACCACCGTCGAGAGCGTCTCTGGTCTCCCTATCTA
GCCGGAGGCACATGCTCTTCCTATTGACGGCGGTTCCGGCTCTTTCAATGAAAGAACCAATCTCCAGAGCGCAGGACATTCCGCTGTTTGGATTGAAGAG
GAAGCTGAAGAAAGCGGAGGAGGAAGCCGAGCAGCTAGTGAAGGAAGGTTTCGAGACCGCGGAGAAGGGGCTCGAGACGGCGGAGAAGGGGTTGGAGACA
GCGGAGAAAGGGCTTGAAACGGCCGAGAAAGGGCTCGAAAGTGCTGAAAGAAGGATTGAGAATGCGCTCAGTTTCGGAGGGCTCGCGCAGGCGGGAGTCG
TCACCGCAGCGGAGGCAGTTGCCGTTCTTGTTGCTACTTCCGTCGTGAACGGAATTTTGGGGCCGGAAGCCCGGAATTATTGA
AA sequence
>Lus10016781 pacid=23149113 polypeptide=Lus10016781 locus=Lus10016781.g ID=Lus10016781.BGIv1.0 annot-version=v1.0
MAATSAQSSAVQSLSCNLPGNAPPSRASLVSLSSRRHMLFLLTAVPALSMKEPISRAQDIPLFGLKRKLKKAEEEAEQLVKEGFETAEKGLETAEKGLET
AEKGLETAEKGLESAERRIENALSFGGLAQAGVVTAAEAVAVLVATSVVNGILGPEARNY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G23670 YCF37 homolog of Synechocystis YCF37... Lus10016781
[exp]
0 1
AT5G54190 PORA protochlorophyllide oxidoreduc... Lus10018579
[exp]
3.5 0.9430
AT4G17600 LIL3:1 Chlorophyll A-B binding family... Lus10000959
[exp]
4.0 0.9423
AT5G17870 PSRP6 plastid-specific 50S ribosomal... Lus10028238
[exp]
4.2 0.9096
AT5G17870 PSRP6 plastid-specific 50S ribosomal... Lus10007237
[exp]
4.5 0.9205
AT5G13510 EMB3136 EMBRYO DEFECTIVE 3136, Ribosom... Lus10001982
[exp]
5.2 0.9215
AT5G66530 Galactose mutarotase-like supe... Lus10028310
[exp]
8.1 0.8789
AT2G23670 YCF37 homolog of Synechocystis YCF37... Lus10022478
[exp]
8.5 0.9047
AT4G20360 AtRab8D, AtRABE... RAB GTPase homolog E1B (.1) Lus10019493
[exp]
12.4 0.9105
AT5G18660 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B R... Lus10038638
[exp]
19.1 0.8979
AT3G56940 CRD1, CHL27, AC... COPPER RESPONSE DEFECT 1, dica... Lus10035398
[exp]
19.6 0.9005

Lus10016781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.