Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50830 255 / 3e-87 ATCOR413-PM2, COR413-PM2 cold-regulated 413-plasma membrane 2 (.1) AT4G37220 228 / 1e-76 Cold acclimation protein WCOR413 family (.1) AT2G15970 202 / 2e-66 ATCYP19, FL3-5A3, ATCOR413-PM1, WCOR413-LIKE, COR413-PM1 CYCLOPHILLIN 19, ARABIDOPSIS THALIANA COLD-REGULATED413 PLASMA MEMBRANE 1, cold regulated 413 plasma membrane 1 (.1.2) AT2G23680 129 / 1e-37 Cold acclimation protein WCOR413 family (.1.2) AT1G29390 49 / 2e-07 COR413IM2, COR314-TM2 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) AT1G29395 44 / 2e-05 COR413IM1, COR413-TM1, COR414-TM1 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021020 [exp] 235 / 3e-79 AT4G37220 258 / 3e-88 Cold acclimation protein WCOR413 family (.1) Lus10012034 [exp] 214 / 9e-71 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Lus10027946 [exp] 208 / 9e-69 AT3G50830 247 / 5e-84 cold-regulated 413-plasma membrane 2 (.1) Lus10027945 [exp] 202 / 4e-66 AT4G37220 245 / 4e-83 Cold acclimation protein WCOR413 family (.1) Lus10012035 [exp] 202 / 4e-66 AT4G37220 242 / 6e-82 Cold acclimation protein WCOR413 family (.1) Lus10023833 [exp] 175 / 3e-56 AT3G50830 175 / 3e-56 cold-regulated 413-plasma membrane 2 (.1) Lus10025378 [exp] 46 / 4e-06 AT1G29390 225 / 2e-74 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10015258 [exp] 46 / 6e-06 AT1G29390 223 / 1e-73 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10004599 [exp] 44 / 3e-05 AT1G29395 201 / 9e-65 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G033801 [exp] 286 / 2e-99 AT3G50830 282 / 1e-97 cold-regulated 413-plasma membrane 2 (.1) Potri.009G109800 [exp] 262 / 1e-89 AT3G50830 238 / 4e-80 cold-regulated 413-plasma membrane 2 (.1) Potri.004G149100 [exp] 246 / 2e-83 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Potri.007G032000 [exp] 61 / 1e-11 AT4G37220 72 / 7e-16 Cold acclimation protein WCOR413 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05562 [flax] [poplar] WCOR413 Cold acclimation protein WCOR413
Representative CDS sequence Show only first row Show all	>Lus10016782 pacid=23149127 polypeptide=Lus10016782 locus=Lus10016782.g ID=Lus10016782.BGIv1.0 annot-version=v1.0 ATGGGGAGGGCAGAATTTTTGACAATGAGGACGGAGGATGAGATGCCACCCTCAATCGACGATCTCAAAGTCGCGGCTATGAATTTTGCCAATGACGCCA CCACTAAGCATGGTGGATTGGGTTTCGGCACTTCTTTCCTCAAGTGGGTTGCCTCTTTTGCTGCAATTTATTTACTGATATTGGACCGAACCAACTGGAG AAGCAACATGCTTACTTCACTCTTAGTCCCTTACATATTCTTCAGCCTTCCATCACCATTGTTTCACTTCTTGAGCAGAGACTCTGGAAAATGGGTTGCG TTCATCACAGTAGTCCTTAGGCTCTTCTATCCTCGCCACTTCCCAGACTGGCTTGAGATGCCCGGATCCTTGATTCTACTACTGGTGGTGGCTCCAAACT TGTTTGCACACACTTTGAAAGATGACTGGATCGGTGTGGCGATATGCCTGCTCATTGGCTGCTATCTATTGCAAGAACACATCAGGGCATCTGGTGGGTT TAGAAACTCTTTCACTCAGTATCATGGAATATCAAACACTCTTGGAATTGTTTTGTTGATAGTCTACCCAGTCTGGTCTCTCCTCATCCATATGCACTAG
AA sequence Show only first row Show all	>Lus10016782 pacid=23149127 polypeptide=Lus10016782 locus=Lus10016782.g ID=Lus10016782.BGIv1.0 annot-version=v1.0 MGRAEFLTMRTEDEMPPSIDDLKVAAMNFANDATTKHGGLGFGTSFLKWVASFAAIYLLILDRTNWRSNMLTSLLVPYIFFSLPSPLFHFLSRDSGKWVA FITVVLRLFYPRHFPDWLEMPGSLILLLVVAPNLFAHTLKDDWIGVAICLLIGCYLLQEHIRASGGFRNSFTQYHGISNTLGIVLLIVYPVWSLLIHMH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10016782 [exp]	0	1
AT3G09890			Ankyrin repeat family protein ...		Lus10022609 [exp]	1.4	0.7192
AT1G51940			protein kinase family protein ...		Lus10036847 [exp]	4.2	0.5853
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10024186 [exp]	5.7	0.7117
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Lus10005733 [exp]	8.3	0.7095
					Lus10027457 [exp]	10.0	0.6956
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10038796 [exp]	10.9	0.5869
					Lus10014650 [exp]	12.0	0.6694
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	13.6	0.6417
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	14.7	0.6417
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	15.7	0.6417

Compare expression of checked genes

Lus10016782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.