Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50820 536 / 0 OEC33, PSBO2, PSBO-2 OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, photosystem II subunit O-2 (.1) AT5G66570 522 / 0 MSP-1, PSBO1, OEE33, OEE1, OE33, PSBO-1 OXYGEN EVOLVING ENHANCER PROTEIN 33, 33 KDA OXYGEN EVOLVING POLYPEPTIDE 1, OXYGEN EVOLVING COMPLEX 33 KILODALTON PROTEIN, MANGANESE-STABILIZING PROTEIN 1, PS II oxygen-evolving complex 1 (.1) AT4G37230 140 / 2e-41 Photosystem II manganese-stabilising protein (PsbO) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022479 [exp] 642 / 0 AT3G50820 530 / 0.0 OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, photosystem II subunit O-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G130400 [exp] 554 / 0 AT3G50820 547 / 0.0 OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, photosystem II subunit O-2 (.1) Potri.007G033700 [exp] 552 / 0 AT3G50820 537 / 0.0 OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, photosystem II subunit O-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [flax] [poplar] MBB PF01716 [flax] [poplar] MSP Manganese-stabilising protein / photosystem II polypeptide
Representative CDS sequence Show only first row Show all	>Lus10016783 pacid=23149148 polypeptide=Lus10016783 locus=Lus10016783.g ID=Lus10016783.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCCTTCAGGCAGCAGCCACACTTATGCAACCCACCAAGGTGGGGAGTTTTCCGTCATCCAGGAGCTCCTCCAACGCCCAGCTGAAGCCTT CTGCTTCTGCTAGAGTCACCTGCTCTCTCCATTCTAACTTTAAGGAATTGGCCCAAAAATGTTTCGATGCTACCAAGCTTGCGGGTTTTGCTCTTGCAAC TTCTGCTCTTGTTGCTTCGGGTGCTGGAGCGGAAGGACCACCGAAGAGGCTAACCTTCGACGAGATCCAGAGCAAAACCTACATGGAAGTGAAGGGAACT GGAACCGCCAATCAATGCCCAACCATCGATGGCGGATCCGAGTCGTTCGCTTTCAAAGCTGGAAAATACCAAGCCAAGAAATTCTGCTTCGAGCCAACTT CCTTCACCGTGAAAGCTGAAGGAATCGCCAAGAACTCCGCCCCTGAATTCCAGAACACCAAGCTCATGACCCGGCTCACCTACACCCTTGACGAAATCGA AGGGCCATTCGAGGTAGCCTCTGACGGTACCGTCAAATTCGAGGAGAAGGACGGGATCGACTACGCGGCTGTCACGGTCCAGCTCCCAGGAGGCGAGCGG GTCCCTTTCCTCTTTACCGTCAAGCAACTGGTGGCCTCCGGGAAGCCAGAGAGCTTCAGCGGAGAATTTTTGGTACCATCTTACCGTGGGTCTTCTTTCT TGGACCCTAAGGGCAGAGGTGGGTCCCAAGGTTACGACAACGCGGTTGCTCTTCCCGCTGGCGGGAGGGGTGACGAGGAGGAGCTAGCCAAGGAGAACAC CAAGAACGCTGCTTCTTCTAGGGGTAAGATTACTCTGAGCGTGACCAAGAGCAAGCCTGAGACTGGGGAGGTCATTGGTGTTTTTGAGAGCGTTCAGCCT TCGGATACTGATTTGGGTGCCAAGGCTCCCAAGGATGTCAAGATTCAAGGGGTTTGGTATGCTCAGCTTGATTGA
AA sequence Show only first row Show all	>Lus10016783 pacid=23149148 polypeptide=Lus10016783 locus=Lus10016783.g ID=Lus10016783.BGIv1.0 annot-version=v1.0 MASSLQAAATLMQPTKVGSFPSSRSSSNAQLKPSASARVTCSLHSNFKELAQKCFDATKLAGFALATSALVASGAGAEGPPKRLTFDEIQSKTYMEVKGT GTANQCPTIDGGSESFAFKAGKYQAKKFCFEPTSFTVKAEGIAKNSAPEFQNTKLMTRLTYTLDEIEGPFEVASDGTVKFEEKDGIDYAAVTVQLPGGER VPFLFTVKQLVASGKPESFSGEFLVPSYRGSSFLDPKGRGGSQGYDNAVALPAGGRGDEEELAKENTKNAASSRGKITLSVTKSKPETGEVIGVFESVQP SDTDLGAKAPKDVKIQGVWYAQLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10016783 [exp]	0	1
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10022479 [exp]	1.0	0.9832
AT1G76100		PETE1	plastocyanin 1 (.1)		Lus10005628 [exp]	1.7	0.9714
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10020717 [exp]	2.0	0.9758
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Lus10039697 [exp]	3.2	0.9493
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10029823 [exp]	3.5	0.9620
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10028806 [exp]	4.5	0.9678
AT2G30570		PSBW	photosystem II reaction center...		Lus10024858 [exp]	4.9	0.9518
					Lus10018772 [exp]	5.3	0.9580
AT3G61470		LHCA2	photosystem I light harvesting...		Lus10006416 [exp]	5.5	0.9628
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Lus10017245 [exp]	8.7	0.9421

Compare expression of checked genes

Lus10016783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.