Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50810 151 / 8e-48 Uncharacterised protein family (UPF0497) (.1) AT4G37235 148 / 9e-47 Uncharacterised protein family (UPF0497) (.1) AT1G49405 124 / 5e-37 Uncharacterised protein family (UPF0497) (.1) AT3G23200 88 / 6e-23 Uncharacterised protein family (UPF0497) (.1) AT5G02060 81 / 3e-20 Uncharacterised protein family (UPF0497) (.1) AT2G28370 76 / 7e-18 Uncharacterised protein family (UPF0497) (.1) AT3G53850 74 / 1e-17 Uncharacterised protein family (UPF0497) (.1) AT2G37200 59 / 1e-11 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041312 [exp] 87 / 4e-22 AT2G28370 258 / 9e-89 Uncharacterised protein family (UPF0497) (.1) Lus10037399 [exp] 87 / 5e-22 AT2G28370 259 / 4e-89 Uncharacterised protein family (UPF0497) (.1) Lus10021469 [exp] 76 / 6e-18 AT2G28370 258 / 7e-89 Uncharacterised protein family (UPF0497) (.1) Lus10000718 [exp] 76 / 6e-18 AT2G28370 254 / 2e-87 Uncharacterised protein family (UPF0497) (.1) Lus10004698 [exp] 72 / 1e-16 AT3G53850 213 / 6e-72 Uncharacterised protein family (UPF0497) (.1) Lus10040264 [exp] 71 / 4e-15 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10010881 [exp] 64 / 1e-13 AT3G53850 143 / 2e-44 Uncharacterised protein family (UPF0497) (.1) Lus10024355 [exp] 62 / 3e-13 AT3G53850 147 / 7e-47 Uncharacterised protein family (UPF0497) (.1) Lus10022188 [exp] 61 / 2e-12 AT3G23200 206 / 3e-69 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G110200 [exp] 185 / 2e-61 AT3G50810 165 / 5e-53 Uncharacterised protein family (UPF0497) (.1) Potri.004G149332 [exp] 185 / 2e-61 AT3G50810 145 / 3e-45 Uncharacterised protein family (UPF0497) (.1) Potri.007G033600 [exp] 185 / 2e-61 AT4G37235 133 / 1e-40 Uncharacterised protein family (UPF0497) (.1) Potri.006G090400 [exp] 94 / 2e-25 AT3G53850 193 / 5e-64 Uncharacterised protein family (UPF0497) (.1) Potri.016G090100 [exp] 90 / 2e-23 AT2G28370 216 / 3e-72 Uncharacterised protein family (UPF0497) (.1) Potri.009G014600 [exp] 86 / 1e-21 AT2G28370 256 / 2e-88 Uncharacterised protein family (UPF0497) (.1) Potri.004G211400 [exp] 84 / 6e-21 AT2G28370 221 / 2e-74 Uncharacterised protein family (UPF0497) (.1) Potri.010G198700 [exp] 77 / 1e-18 AT3G53850 206 / 5e-69 Uncharacterised protein family (UPF0497) (.1) Potri.010G073000 [exp] 63 / 2e-13 AT3G23200 182 / 7e-60 Uncharacterised protein family (UPF0497) (.1) Potri.008G165500 [exp] 61 / 2e-12 AT3G23200 174 / 1e-56 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10016784 pacid=23149091 polypeptide=Lus10016784 locus=Lus10016784.g ID=Lus10016784.BGIv1.0 annot-version=v1.0 ATGGAAGACCAAGTGCCTGGGTCAATGGGGACCCGAGCTAGCTTGGCTCTGAGGCTGGGTCAGACCATCTTTTCAACTGCTTCCCTTCTCTTCATGTGCC TCCACATCGATTTCTACAGCTACACTGCTTTCAGCTATTTGGTGACTGTAATGGGATTAATGATCCCGTGGAGCTTAACGCTAGTTGTGGTAGATGCATA CTCAGTATTCGTAAAGTATTTGCCTCATCAGCCAAGGATCTTGTTGGTCATCATAGCCGGAGATTGGGTTTTGTCATATCTGTCGTTGGCAGCAGCCTGC GCTACAGCAAGTGTCACAGACCTCCTATTAACTGCTGCTGGTGGATCCTTCTGCCCTCCAAAGTTATGCAGCAGGTTTCAATTGTCAGCAACCATGGCAT TCTTGTCTTAG
AA sequence Show only first row Show all	>Lus10016784 pacid=23149091 polypeptide=Lus10016784 locus=Lus10016784.g ID=Lus10016784.BGIv1.0 annot-version=v1.0 MEDQVPGSMGTRASLALRLGQTIFSTASLLFMCLHIDFYSYTAFSYLVTVMGLMIPWSLTLVVVDAYSVFVKYLPHQPRILLVIIAGDWVLSYLSLAAAC ATASVTDLLLTAAGGSFCPPKLCSRFQLSATMAFLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50810			Uncharacterised protein family...		Lus10016784 [exp]	0	1
AT5G57710			Double Clp-N motif-containing ...		Lus10023201 [exp]	12.3	0.8476
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10008963 [exp]	23.6	0.8718
AT2G38640			Protein of unknown function (D...		Lus10007423 [exp]	25.0	0.8864
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008189 [exp]	32.6	0.8952
AT5G42000			ORMDL family protein (.1.2)		Lus10033219 [exp]	32.9	0.8679
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10009944 [exp]	47.5	0.8766
					Lus10003603 [exp]	54.6	0.8788
AT1G30090			Galactose oxidase/kelch repeat...		Lus10042824 [exp]	57.1	0.8650
AT4G38260			Protein of unknown function (D...		Lus10016024 [exp]	57.9	0.8768
AT4G25030			unknown protein		Lus10036513 [exp]	58.8	0.8792

Compare expression of checked genes

Lus10016784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.