Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23690 139 / 2e-42 unknown protein AT5G66580 132 / 4e-40 unknown protein AT3G50800 127 / 5e-38 unknown protein AT4G37240 126 / 2e-37 unknown protein AT1G76600 73 / 3e-16 unknown protein AT1G21010 69 / 1e-14 unknown protein AT1G18290 50 / 5e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019659 [exp] 166 / 2e-53 AT5G66580 141 / 4e-44 unknown protein Lus10000739 [exp] 127 / 1e-38 AT5G66580 105 / 6e-30 unknown protein Lus10012442 [exp] 67 / 3e-14 AT1G76600 152 / 2e-46 unknown protein Lus10033761 [exp] 65 / 4e-13 AT1G76600 150 / 1e-45 unknown protein Lus10035664 [exp] 58 / 7e-11 AT1G21010 125 / 4e-36 unknown protein Lus10037249 [exp] 58 / 1e-10 AT1G76600 130 / 4e-38 unknown protein Lus10035268 [exp] 45 / 4e-06 AT5G17350 116 / 4e-33 unknown protein Lus10013490 [exp] 44 / 2e-05 AT3G03280 110 / 6e-31 unknown protein Lus10007960 [exp] 43 / 4e-05 AT3G03280 109 / 3e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G130200 [exp] 173 / 3e-56 AT2G23690 174 / 2e-56 unknown protein Potri.007G033400 [exp] 166 / 2e-53 AT2G23690 165 / 7e-53 unknown protein Potri.004G149600 [exp] 119 / 1e-34 AT4G37240 125 / 5e-37 unknown protein Potri.009G110600 [exp] 112 / 7e-32 AT2G23690 112 / 1e-31 unknown protein Potri.004G149800 [exp] 80 / 2e-19 AT5G66580 91 / 7e-24 unknown protein Potri.009G110700 [exp] 76 / 8e-18 AT5G66580 77 / 2e-18 unknown protein Potri.005G259100 [exp] 61 / 1e-11 AT1G21010 186 / 9e-60 unknown protein Potri.015G036800 [exp] 59 / 2e-11 AT1G18290 122 / 1e-35 unknown protein Potri.006G105500 [exp] 56 / 2e-10 AT3G03280 65 / 2e-13 unknown protein Potri.012G045600 [exp] 56 / 2e-10 AT1G18290 129 / 1e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016785 pacid=23149048 polypeptide=Lus10016785 locus=Lus10016785.g ID=Lus10016785.BGIv1.0 annot-version=v1.0 ATGGGTAACTGTCGGTCTTGCCAATCAACGGGCGTCTCCTCAAGTACGGCGAAGCTGATTCTACTGGACGGCCAGCTTCTGGAATTCTGCTATCCGATTA AGGTTTCGTACGTCTTGCAGAAGAATCCCGCGTATTTCATCTGCAATGTTGATGAGATGGAGTTCCACAATGTCCTTTTCGCGGTCAGCGAAGAAGAAGA CCTTCAGCCAGGTCAGCTCTACTTCGCTCTCCCACTCAGCTGGCTGAAGCACCCCTTGCAGCCTGAGCAAATGGCCGTATTGGCTGTCAAAGCCAACTCC GCCGTGATGAAGCACGGCGGCGTCCTCGCCGATAGTTGCCGGATGTCCGTAAAGCCGATATCATTTTCCCATGACGTGGGTCAGCCTGGCAGCACAGGAT CTGTTCCCTCCGTAGCCGGCGACGGTGGACGGAGGATGAGGAGGAGAAATTGTAGGAAGTTTACCGCGATGTTGAACGCCATACCGGAGTAA
AA sequence Show only first row Show all	>Lus10016785 pacid=23149048 polypeptide=Lus10016785 locus=Lus10016785.g ID=Lus10016785.BGIv1.0 annot-version=v1.0 MGNCRSCQSTGVSSSTAKLILLDGQLLEFCYPIKVSYVLQKNPAYFICNVDEMEFHNVLFAVSEEEDLQPGQLYFALPLSWLKHPLQPEQMAVLAVKANS AVMKHGGVLADSCRMSVKPISFSHDVGQPGSTGSVPSVAGDGGRRMRRRNCRKFTAMLNAIPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23690			unknown protein		Lus10016785 [exp]	0	1
AT5G18910			Protein kinase superfamily pro...		Lus10012776 [exp]	1.4	0.7199
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10040029 [exp]	8.9	0.6740
AT5G66580			unknown protein		Lus10019659 [exp]	10.4	0.7124
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019759 [exp]	12.5	0.6526
AT1G08590			Leucine-rich receptor-like pro...		Lus10027951 [exp]	17.8	0.7036
AT1G31440			SH3 domain-containing protein ...		Lus10034755 [exp]	20.0	0.6606
AT1G28580			GDSL-like Lipase/Acylhydrolase...		Lus10019947 [exp]	25.5	0.6586
AT1G07710			Ankyrin repeat family protein ...		Lus10015224 [exp]	30.0	0.6637
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10000605 [exp]	30.6	0.6590
AT5G01580		OSH1	OAS HIGH ACCUMULATION 1, gamma...		Lus10002203 [exp]	39.5	0.6020

Compare expression of checked genes

Lus10016785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.