Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66600 610 / 0 Protein of unknown function, DUF547 (.1.2.3.4) AT2G23700 462 / 1e-154 Protein of unknown function, DUF547 (.1) AT3G18900 284 / 5e-88 unknown protein AT1G76620 225 / 6e-66 Protein of unknown function, DUF547 (.1) AT1G21060 224 / 8e-66 Protein of unknown function, DUF547 (.1.2) AT5G47380 224 / 2e-64 Protein of unknown function, DUF547 (.1) AT1G43020 213 / 3e-62 Protein of unknown function, DUF547 (.1.2.3.4) AT3G13000 183 / 4e-50 Protein of unknown function, DUF547 (.1.2) AT1G16750 171 / 5e-46 Protein of unknown function, DUF547 (.1) AT4G37080 151 / 8e-39 Protein of unknown function, DUF547 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022480 [exp] 1068 / 0 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10040507 [exp] 228 / 3e-68 AT2G23700 222 / 1e-65 Protein of unknown function, DUF547 (.1) Lus10007795 [exp] 207 / 5e-57 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10033328 [exp] 184 / 5e-50 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10034787 [exp] 174 / 2e-46 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10027653 [exp] 167 / 4e-44 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2) Lus10039917 [exp] 164 / 3e-43 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10011308 [exp] 157 / 4e-43 AT2G23700 157 / 4e-43 Protein of unknown function, DUF547 (.1) Lus10037293 [exp] 164 / 6e-43 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G033100 [exp] 817 / 0 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.005G130000 [exp] 813 / 0 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.004G150000 [exp] 528 / 0 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.009G111100 [exp] 528 / 0 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.002G001900 [exp] 299 / 1e-93 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1) Potri.001G157200 [exp] 218 / 2e-62 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.006G216800 [exp] 180 / 8e-49 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.007G003900 [exp] 173 / 4e-46 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.009G009500 [exp] 153 / 2e-39 AT5G60720 537 / 0.0 Protein of unknown function, DUF547 (.1) Potri.010G202900 [exp] 152 / 4e-39 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Lus10016786 pacid=23149115 polypeptide=Lus10016786 locus=Lus10016786.g ID=Lus10016786.BGIv1.0 annot-version=v1.0 ATGACGATGGGTTATGATGAAGAGGGGAAAATGGCGGGAGTGCGTGTGGAATGTGGTCACAAACGTTCCAAGAGCTTCCCAGGCAAAAAGGTAGTGGAAG AAGATGGACCAGCTACTTCTCTTGGAGCTTCACTCCGTATCAAGCTAGACATGGGACACCTGAAGGACTCTGTTAATAGCAAGAGGAAACAATCCCCAAG GGCTGAAGCTCAGAGTTCTTTGAAACATGAGATTCAACAGCTTGAGAAAAGATTACAAGATCAATTTGGGGTTCGTCGTGCACTGGAGAAGGCATTGGGT TACCGGGCTTCCTCCATTGGAGATGTGTCTGACGAATTAATAATGCCCAAGCCAGCCACAGAATTGATCAAGGAAATAGCAGTGCTAGAGCTTGAAGTCG TATATTTGGAGCAGTACCTCCTTTCCTTGTACAGGAAAGCATTTGATCAACAAGTATCTTCAGGATCCAAATCCACTGTAACAACTCCAAGACTCGGGTT CCAAGATGTTCCTAGACCTGATGTCATGTTAACAAGGGATACTTCAACCAGTCAAATTGGCTTCCAGTCACAGGACAATCCATCAAAGGACTCCACCAGT CTTACAGGACAAGAAGAGCTATTAGACTCCAGTGTTCAACGCTCTCAATCCTCGTTATCACAATGTTCAGCATTTTCAGCAAGAGTTTCTCCTCCTGCAG ATTCTTTGGGGAGAGCTGTGCGTTCCTGTCATTCACAGCCTTTGTCCATGATGGAGTTTGCCCAAAATGCAACAAATGTTATCAGCTTGGCAGATCACCT TGGTACACGGATCTCGGATCATGTTCCAGAAACACCTAACAAGCTTTCCGAGGATATGATTAGGTGCATGTCAGCAATATACTGCAAGCTTTCAGATCCA CCAGTGACAAACAAAGGACTGTCGTCTCCCATATCATCCTTATCTTCAATGAGTGATTTTTCTCCCCGAGAGCAATGCGACATGTGGAGTCCAGGGTTCA GGAACAATTCATCTTTTGACGTACGGCTAGAGAATCCATTTCTTGTTGAGGGACTGAAAGAGTTCAGTGGACCTTACAGTACAATGGTTGAAGTGCCTTG GATTTACAGGGATAATCAGAAGCTGGGAGACGTTGAGCCCTTGCTGCAGAATTTCAGATCACTCATTTGTAGATTAGAAGGAGTTGACCCAAGGAAGCTC AAACACCAGGAGAAGCTTGCTTTCTGGATCAATGTTCATAACTCTTTAGTGATGCATGCTTTTCTGGCATACGGTATTCCACAGAACAATGTGAAGAGAC TTTTCCTACTACTGAAGGCTGCTTATAACGTTGGCGGTCATACGATTAGTGCAGACGCAATCCAGAGTAACATCCTACGATGCCGAATGTCTCGTCCTGG ACAGTGGATCCGATTATTAATCCCTTCAAGATCCAAATTCAAGTCGGGGGATGAAAGACAAACATACACAATTGATCATCAAGAACCCCTATTGCATTTT GCACTCAGCTCTGGAAGCCATTCTGACCCTGCCGTACGAGTCTACACATCGAAAGCAGTATACCAAGAGATGGAAGCAGCAAAAGACGAATACATTCGAG CTACATTTGGGGTACGAAAGGACCTAAGAATCCTACTTCCAAAGATTGTGGAGAGCTTTGGGAAGGATTCAGGTCTAAGTCAAGCTGCTGTGGTAGAAAT GATCCAAGCATCTCTACCAGATTGTCTAAGGAAATGTGTGAGGAAATGTCAGCTAGGAAGACCGCGGAAGATGATCGAATGGATGCCACATAACTTCAGT TTCAGGTATCTGATATCAAAAGAGCTGGCTAGTGCAGTGCAGTGCCGTGCCGTGTCATCTCAGTCAGGAGAAACGGGTCGTCGTAGTGTTTATGAAAGGA AATGGAAAGCTGTGCATTGA
AA sequence Show only first row Show all	>Lus10016786 pacid=23149115 polypeptide=Lus10016786 locus=Lus10016786.g ID=Lus10016786.BGIv1.0 annot-version=v1.0 MTMGYDEEGKMAGVRVECGHKRSKSFPGKKVVEEDGPATSLGASLRIKLDMGHLKDSVNSKRKQSPRAEAQSSLKHEIQQLEKRLQDQFGVRRALEKALG YRASSIGDVSDELIMPKPATELIKEIAVLELEVVYLEQYLLSLYRKAFDQQVSSGSKSTVTTPRLGFQDVPRPDVMLTRDTSTSQIGFQSQDNPSKDSTS LTGQEELLDSSVQRSQSSLSQCSAFSARVSPPADSLGRAVRSCHSQPLSMMEFAQNATNVISLADHLGTRISDHVPETPNKLSEDMIRCMSAIYCKLSDP PVTNKGLSSPISSLSSMSDFSPREQCDMWSPGFRNNSSFDVRLENPFLVEGLKEFSGPYSTMVEVPWIYRDNQKLGDVEPLLQNFRSLICRLEGVDPRKL KHQEKLAFWINVHNSLVMHAFLAYGIPQNNVKRLFLLLKAAYNVGGHTISADAIQSNILRCRMSRPGQWIRLLIPSRSKFKSGDERQTYTIDHQEPLLHF ALSSGSHSDPAVRVYTSKAVYQEMEAAKDEYIRATFGVRKDLRILLPKIVESFGKDSGLSQAAVVEMIQASLPDCLRKCVRKCQLGRPRKMIEWMPHNFS FRYLISKELASAVQCRAVSSQSGETGRRSVYERKWKAVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66600			Protein of unknown function, D...		Lus10016786 [exp]	0	1
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032572 [exp]	1.0	0.8972
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10024110 [exp]	9.9	0.8630
AT1G01150			Homeodomain-like protein with ...		Lus10026308 [exp]	10.2	0.8470
AT5G40280		ATFTB, WIG, ERA...	WIGGUM, ENHANCED RESPONSE TO A...		Lus10014536 [exp]	10.2	0.8143
AT5G12230		MED19A	unknown protein		Lus10008738 [exp]	12.6	0.8506
AT1G71840			transducin family protein / WD...		Lus10032994 [exp]	16.9	0.8416
AT5G26770			unknown protein		Lus10001515 [exp]	18.5	0.8761
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	20.0	0.8519
AT1G15030			Protein of unknown function (D...		Lus10033747 [exp]	22.1	0.8471
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10018019 [exp]	25.6	0.8447

Compare expression of checked genes

Lus10016786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.