Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23740 1323 / 0 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT2G22740 133 / 2e-31 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G35160 129 / 4e-30 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT5G04940 120 / 2e-27 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 118 / 7e-27 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT3G03750 113 / 1e-26 SUVR3, SDG20 SET domain protein 20 (.1.2) AT5G13960 114 / 2e-25 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT3G04380 109 / 2e-24 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT4G30860 104 / 7e-23 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT1G04050 105 / 1e-22 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022483 [exp] 2385 / 0 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10022482 [exp] 593 / 0 AT2G23740 292 / 9e-90 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10001011 [exp] 160 / 2e-39 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 159 / 5e-39 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 154 / 6e-38 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10002571 [exp] 131 / 4e-31 AT5G13960 444 / 1e-149 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10031984 [exp] 130 / 2e-30 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10035115 [exp] 129 / 4e-30 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10001798 [exp] 124 / 6e-29 AT5G13960 446 / 8e-150 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G033000 [exp] 1958 / 0 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.005G129800 [exp] 1922 / 0 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.003G083100 [exp] 143 / 4e-34 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.003G162801 [exp] 139 / 2e-33 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.006G027600 [exp] 129 / 2e-30 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.013G064600 [exp] 122 / 1e-29 AT3G03750 258 / 1e-83 SET domain protein 20 (.1.2) Potri.016G025300 [exp] 125 / 4e-29 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.003G188700 [exp] 114 / 1e-25 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.002G237950 [exp] 114 / 2e-25 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G192500 [exp] 113 / 4e-25 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10016788 pacid=23149138 polypeptide=Lus10016788 locus=Lus10016788.g ID=Lus10016788.BGIv1.0 annot-version=v1.0 ATGGAACTTCTTCCTCAGTGTGGTGTTCATGATGGCGGTGAAGCTGATTCTAGTCAACATAACATTGGAGCAGGTAAAAGCCACGAAGAAGGAAACCAAG TAGAAAATGCCAGTGTTATAGTCAGTGAATCAATGCAAAACCTTGGAGGGTCTGAAGTCGTAGGACAAACTAGAGCTTCAGGAAGTGAGAGAATCTCTTA TGAGTATCATGATTTTGATGAAGATGACTCGAGTCTACAGCAGGGCACAAGCGAATCTTGTGCAGCTCCTATGAAATCTAATGTTGTTCTACATACTATG GAAATTGAACCAACCAACTCTAGGGAGGGAGATCATTCTTTCTCTGAACCTTTAGCTCTATGGGTAAAGTGGAGAGGGAAGTGGCAGGCAGGAATCAGAT GTGCAAGAGCTGACTGGCCGCTGTCAACTTTGAGAGCGAAACCCACTCATGATCGGAAGCAGTACTTCGTCGTATTTTTCCCGAATACCAGAAATTATTC CTGGGCAGATATGTTACTTGTCCGATCGATAAGTGAAACTCCTGAGCCGATTGCATATAAGTCGCACAAAGGTGGACTTAAATTGGTTAAAGATTTGAGC GTTGCACGACGGTTCATAATGCAAAAACTAGCCGTTGGGATGCTGAATATCGTTGATCAATTTCATAATGAGGCTCTGGTAGAATCTGCTCGCTCCGTGC TGGTGTGGAAGGAGTTTGCTATGGAAGCATCACGCTGTAGTGGTTATGGTGATCTCGGAAGAATGCTTCTCAAGCTTCAAAATATGATTTTGCAGAAGTA CATAGAGGCTGATTGGTTGTCCAGTTCTTTTCAATCATGGGTGCAACAGTGTCAGGTTGCATGTAGTGCTGAATCAATCGAGTTGTTGAGAGAGAAATCT ATGATTCTGCAGCAACATGCATTGCTCTTGCTGATGTCTTCTGTTTCTCCGCCTCCCTTCCTGTCACAACAGGAACTATATGATTCCATCTTGTGGAATA AAGTCAATTCTCTTGGGGATGCATCAGTGCAATCAACATTAGGCTCTGAGTGGAAAACCTGGAAGCATGAAGTTATGAAATGGTTTTCAACATCTCACCC CTTATCTGCTGGTGGAGAGACAGAGCGTAGACGTTCTGGTAGCCCTTCAGAAGTAGGACATCAAGTAAATCTGAAAAGGCCCAAGCTTGAAGTTCGCCGT GCAGAACCACATGCTGGGCAAGTGGAAATGAGCTATCCACGGCAAACTATGACAGTGGATATTGATTCCGAGTTCTTCAGCAAGCGAGAAACTACGAGCA GTGCACCTTTGTCAACCGGACTTTCAAGAGTGGAAGATATCCAAAAAGGAGCTATGCCAATAGATTCTCCTAGTAGTGTGCCTGGTAGATGGGATGGAAT TGTTGTAGAAGCTTCAAGTTCATTGCCTAGCTCTAGCAAGGGGGCAGAAAAAACTCCTCCCAGTGGCCTCATGGCTATGAATGCTACAGATCCTGGTAAT GGTAGAAACAGGCAGTGCACTGCTTTCATTCAGTCTAAGGGTAGGCAATGTGTGAGGTGGGCAAATGAAGGTGATGTCTACTGCTGTGTGCATCTAGCCT CCCGTTTCACAGGTGGCTCTACCAAGGGAGAGGTAAGTTCTCCAGTCCATAACCCAATGTGTGACGGAACCACAGTACTTGGCACTCGATGCAAACACCG TTCCCTGCCAGGTTCTTCATTCTGCAAGAAACACGGACCAAAGACAGATACCAATTTACTACAGAATTCACTCAAAAGAAAGCACGGTGTATTTGTTTCC ACTCCAGAAACATCACAGTGTCGGGATATAGTGCTATTTGAACAAGCTGAAAGTCCCCTTCAAGTGGAGCCTGTCTCAGTCGTGGCATGTGATAATGGTG ATTCATACCATGCAATAAATGGTTTATCGGGTATGTTTGATGAGTCCAGTATGAATTATCCTGGTAAAGAGGTGCAGCATTGCGTAGGTTCAAACGCGTT GGATAACAATGCTCCTTGTCATGAAACCCCGAAGCGCTATACATTATACTGTGATAGCCACATCCCAAGCTGGCTTAAGCGTGCAAGGAATGGTAGGAGT AGAATAATATCAAAAGAGGTATTTCTGGATCTCTTGAAAGGTTGTTGCTCTGTGGAGCAAAAGTTGCATTTACACAAAGCATGTGAGCTATTTTACAAAC TCTTCAAGAGCATTTTGTCTCTAAGAAACCCAGTTCCGTTGGAGGTTCAACTTCAGTGGGCCCTGACTGAAGCTTCTAAAGATTTCGGGGTGGGGGAGTT CTTGCTGAAGTTAGTTTGCACTGAAAAAGAGAGACTGGGAAGCATTTGGGGCCTTGGTGGTGATGAAGATCCACATGTTTTACCCTCTCGTGTTGGTAAA TCAGCAGGTTTACCCACACCTATTGATGGTGGTCATGAAGATGGACAATATATTAGGTGCAAGATTTGCTTTGATAAGTTTACTGATGACCAAGAACTTT GCAGCCACTGGATGGACAATCATAAAAAGGAGGCACAATGCCTCTTCAGAGAGCATGCTTGTGCTATTTGTCTTGATTCTTTTACAGACAAGAAAGGTTT AGAAGCACATGTGCAGGACAGACATCATGTGCAGTTTGTTGAACAATGCATGCTTCTTCTTTGCATCCCATGTAAAAGTCACTTTGGCAATGCTGAACAG TTATGGTCACATGTCCTCTCAGTTCACCCACTTGATTTTAGAGTGGAAAAATCTGATCAACAGCTTATTGTTTCTGCACCTGATCCTAAGCAGAAACTCA AGCAAACAGCTGAGCTGGATAATGGATCTTTTGACAAACCTACCACTAGTAATCCAAATGGTGTACGGAAATTTATTTGCAGGTTCTGTGGTTTGAAGTT CGACCTCCTGCCTGATCTTGGTCGCCACCATCAGGCTGCTCATATGGGACCAAATATATTGAACTGTCGACCCCAAAAGAAAAGATTTGGCTACTATGCT TATAGATCAAAATCTGGTAGACTTACCCGTCCAAGATTTAAGAAAGGTATGGCTACAGCTGCATACAGGATCAGGAATAGGGCTAATGCTAGTTTGAAGA AACGTATCCAGGCTACTAAGTCACTGAGTTCCATGGACTTAAATGTTCAGCCTCGCTTAAGTGATCCAACGGCTCTTGGTCGGTTGGCCGAATCTCAATG CTCAGCAGTTGCTAAGATTCTGTTTTCTGAGATTCAGAAGACCAACCCTCGCCCAAATAACCCTGAAATTTTAGCTACTGCACGCTCTGTGTGCTGCAGG GTGAGCCTAAAAGCGTCCCTTGAGGGCAAATATGGACTATTGCCAGAACGTATTTATCTCAAAGCAGCCAAACTGTGCAGTGAGCATAATATTCAAGTGG AGTGGCATCATGAAGGATTTGTTTGTCCCAGAGGATGCAAGAGTTATAAGGACCTCGAGTTGCTATCACCCTTGATCCCGCTTCCTAATGTTCCCACAGG AAAACGGTCAGATAATTCTTTGAATCATGTCCACGATGATTGGCTGGTGGATGAATGCCACTATATTATTGATTTGGATGATGTTAGAGAGGAAAGTAAG CGAAAGGTAGTTGTCCTGTGTCAGGATATCAGCTTTGGTAAGGAGTCGATACCAATTGCTTGTGTGGCAGACGAGCAGTTAATCAATTCCCTTGATGGCT CGGCAGATAACTCAGATGTTCAAAACACTGTTAGGCCTTGGGAATCTTTCACCTACCTAACTAACACATTATTTAATCATTCCAGCGATCCTGATTTTGA GAGTTTGCAGGTGGGATGCTCCTGTCCATATTCAGTGTGCTGTTCTGAAACATGTGATCATGTTGACCTCTTTGATGATGATTATGAAGATGCAAAAGAC ATATATGGAGCGCCAATGCATGGAAGATTTCCATATGACGATAAAGGAAGGATAATCCTGGAGGAGGGATACCTTGTTTATGAGTGTAACAATATGTGTA GTTGCAATAATACATGCCCAAATAGAGTACTGCAGAATGGAGTACGTGTGAGGTTGGAAGTTTTCAAAACAGAAAATAAGGGCTGGGCAGTCAGGGCAGG TGAGCATATCCTACGTGGCACATTTATATGTGAATACATAGGAGAAGTGTTAGGCGAAGATGAGGCGAATAAGAGACGAATAAGCTATGGCGAAGGTGGT TGCAGCTATATGTATAGTATTGATGATCATACGAATGACATGAGCAGAATGATACAAGGGGAAGCCAACTACGTCATTGATGCCACAGCTTATGGAAATG TGTCGCGGTTCATAAATCACAGCTGCTTACCAAATCTTGAAACCCATCAAGTTATTATCAATAGCATGGATTCTCTGCGCTCTCATATTGGCCTTTATGC AAGTCGAGATATAGCTTATGGTGAAGAACTGACGCACAACTACCGGTACAATATTGTGTCTGGACAAGGTCATCCATGCCATTGTGGTACCTCCAGGTGT TGCGGCCACCTGCACTGA
AA sequence Show only first row Show all	>Lus10016788 pacid=23149138 polypeptide=Lus10016788 locus=Lus10016788.g ID=Lus10016788.BGIv1.0 annot-version=v1.0 MELLPQCGVHDGGEADSSQHNIGAGKSHEEGNQVENASVIVSESMQNLGGSEVVGQTRASGSERISYEYHDFDEDDSSLQQGTSESCAAPMKSNVVLHTM EIEPTNSREGDHSFSEPLALWVKWRGKWQAGIRCARADWPLSTLRAKPTHDRKQYFVVFFPNTRNYSWADMLLVRSISETPEPIAYKSHKGGLKLVKDLS VARRFIMQKLAVGMLNIVDQFHNEALVESARSVLVWKEFAMEASRCSGYGDLGRMLLKLQNMILQKYIEADWLSSSFQSWVQQCQVACSAESIELLREKS MILQQHALLLLMSSVSPPPFLSQQELYDSILWNKVNSLGDASVQSTLGSEWKTWKHEVMKWFSTSHPLSAGGETERRRSGSPSEVGHQVNLKRPKLEVRR AEPHAGQVEMSYPRQTMTVDIDSEFFSKRETTSSAPLSTGLSRVEDIQKGAMPIDSPSSVPGRWDGIVVEASSSLPSSSKGAEKTPPSGLMAMNATDPGN GRNRQCTAFIQSKGRQCVRWANEGDVYCCVHLASRFTGGSTKGEVSSPVHNPMCDGTTVLGTRCKHRSLPGSSFCKKHGPKTDTNLLQNSLKRKHGVFVS TPETSQCRDIVLFEQAESPLQVEPVSVVACDNGDSYHAINGLSGMFDESSMNYPGKEVQHCVGSNALDNNAPCHETPKRYTLYCDSHIPSWLKRARNGRS RIISKEVFLDLLKGCCSVEQKLHLHKACELFYKLFKSILSLRNPVPLEVQLQWALTEASKDFGVGEFLLKLVCTEKERLGSIWGLGGDEDPHVLPSRVGK SAGLPTPIDGGHEDGQYIRCKICFDKFTDDQELCSHWMDNHKKEAQCLFREHACAICLDSFTDKKGLEAHVQDRHHVQFVEQCMLLLCIPCKSHFGNAEQ LWSHVLSVHPLDFRVEKSDQQLIVSAPDPKQKLKQTAELDNGSFDKPTTSNPNGVRKFICRFCGLKFDLLPDLGRHHQAAHMGPNILNCRPQKKRFGYYA YRSKSGRLTRPRFKKGMATAAYRIRNRANASLKKRIQATKSLSSMDLNVQPRLSDPTALGRLAESQCSAVAKILFSEIQKTNPRPNNPEILATARSVCCR VSLKASLEGKYGLLPERIYLKAAKLCSEHNIQVEWHHEGFVCPRGCKSYKDLELLSPLIPLPNVPTGKRSDNSLNHVHDDWLVDECHYIIDLDDVREESK RKVVVLCQDISFGKESIPIACVADEQLINSLDGSADNSDVQNTVRPWESFTYLTNTLFNHSSDPDFESLQVGCSCPYSVCCSETCDHVDLFDDDYEDAKD IYGAPMHGRFPYDDKGRIILEEGYLVYECNNMCSCNNTCPNRVLQNGVRVRLEVFKTENKGWAVRAGEHILRGTFICEYIGEVLGEDEANKRRISYGEGG CSYMYSIDDHTNDMSRMIQGEANYVIDATAYGNVSRFINHSCLPNLETHQVIINSMDSLRSHIGLYASRDIAYGEELTHNYRYNIVSGQGHPCHCGTSRC CGHLH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10016788 [exp]	0	1
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10034126 [exp]	4.1	0.8674
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10007449 [exp]	4.9	0.8789
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	5.2	0.8983
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10027715 [exp]	5.5	0.8830
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10000051 [exp]	6.2	0.8687
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	7.2	0.8973
AT3G04160			unknown protein		Lus10021982 [exp]	8.9	0.8677
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10002076 [exp]	9.2	0.8906
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022483 [exp]	10.7	0.8595
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10037390 [exp]	11.2	0.8344

Compare expression of checked genes

Lus10016788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.