Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50780 381 / 5e-130 unknown protein AT1G63850 234 / 1e-72 BTB/POZ domain-containing protein (.1) AT5G60050 229 / 4e-71 BTB/POZ domain-containing protein (.1) AT2G13690 174 / 5e-50 PRLI-interacting factor, putative (.1) AT3G19920 45 / 4e-05 unknown protein AT3G05675 43 / 0.0002 BTB/POZ domain-containing protein (.1.2) AT4G10800 42 / 0.0005 unknown protein AT2G24692 39 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022484 [exp] 596 / 0 AT3G50780 602 / 0.0 unknown protein Lus10024658 [exp] 248 / 1e-77 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10017511 [exp] 246 / 4e-76 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10028772 [exp] 224 / 7e-68 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 221 / 1e-67 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023336 [exp] 218 / 1e-66 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10020892 [exp] 150 / 5e-41 AT2G13690 479 / 3e-164 PRLI-interacting factor, putative (.1) Lus10033484 [exp] 149 / 2e-40 AT2G13690 478 / 7e-164 PRLI-interacting factor, putative (.1) Lus10040458 [exp] 75 / 1e-14 AT1G63850 84 / 5e-17 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032800 [exp] 477 / 2e-167 AT3G50780 654 / 0.0 unknown protein Potri.005G129700 [exp] 446 / 9e-156 AT3G50780 623 / 0.0 unknown protein Potri.001G100900 [exp] 251 / 2e-78 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.001G233900 [exp] 242 / 3e-76 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 231 / 1e-70 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G058700 [exp] 171 / 9e-49 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.007G109300 [exp] 161 / 3e-45 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.004G154600 [exp] 69 / 6e-13 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016789 pacid=23149077 polypeptide=Lus10016789 locus=Lus10016789.g ID=Lus10016789.BGIv1.0 annot-version=v1.0 ATGCAGGTTGCTGAACTTCTGGGCTTCAGTTCATGCATAGATTCATGCTTGGAATATCTAGAAGCAGTTCCATGGATTGGTGAAGAAGAAGAGGAGAAGG TGGTCTTTACCATTCTTCAACTTCAGAATGAGGGCATCGGAGTATCACCAATTCTAAAACGGATTTCGTCTGATGATTCTGCTCCACCTAAGGACACACT GCCTGACATATTAGAACTCGTTCTCAGAAGCAATGAGGAAGTAGGGCGTCGTGAAATGAAGTCTATAGTCCTGAAGCTTCTTCGAGAGAGCAACAATCTT CCAAGCCCTGTTGATGTCTGCAATCAAAGTCTTTACAGCTCATGCACAAGTTGCTTGAACTCGCTGCTATCTTTCTTCAAGCAAGCTGCCAAAGTCGAGT TTGTTGCCAAGCCAATGGACAACAAGGAACTAGTGTTGAAACAAATAGCCCTGGAAGCTGATAATCTCTTGTGGTTGCTTGACATCTTAGCCGACAGACA AGCAGCAGATGAGTTTGCTGCACTGTGGACAGTGCAGTATGAGTTAGCAGCATTACATACGATTCTTCCAGTAGTAACTCGGTACCATGTTAGTTGTATA ACTGCAAGACTGTTTATTGGGATAGGTAGAGGGGAACTGCTACCATCTAAGGACACTCGTCAATTGTTGTTAGAGACCTGGCTGCAGCCATTGATGAATG ACTACAGTTGGTTAACACATGGTTACAGATCATTCGACAGGAAAGTTGTGGAAGAAGGAATTGGAAGGACAATCCTCACACTTCCATTGGAGAAGCAACA GAGCATTTTGCTTGCTTGGTTGGGGAGTTTCTTGAAGGCTGGTGATAGCTGCCCCAATCTGCAAAAGGCATTTGAGGTCTGGTGGAGGCGAGCCTTCATC AGACCTTACCTTCAAAGTCAAGGCAATAACGTTCGGCTCTCCGAGCCAGTAGATACTTCTGTAATGACATCAGAAGAATGA
AA sequence Show only first row Show all	>Lus10016789 pacid=23149077 polypeptide=Lus10016789 locus=Lus10016789.g ID=Lus10016789.BGIv1.0 annot-version=v1.0 MQVAELLGFSSCIDSCLEYLEAVPWIGEEEEEKVVFTILQLQNEGIGVSPILKRISSDDSAPPKDTLPDILELVLRSNEEVGRREMKSIVLKLLRESNNL PSPVDVCNQSLYSSCTSCLNSLLSFFKQAAKVEFVAKPMDNKELVLKQIALEADNLLWLLDILADRQAADEFAALWTVQYELAALHTILPVVTRYHVSCI TARLFIGIGRGELLPSKDTRQLLLETWLQPLMNDYSWLTHGYRSFDRKVVEEGIGRTILTLPLEKQQSILLAWLGSFLKAGDSCPNLQKAFEVWWRRAFI RPYLQSQGNNVRLSEPVDTSVMTSEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50780			unknown protein		Lus10016789 [exp]	0	1
AT3G26115			Pyridoxal-5'-phosphate-depende...		Lus10006235 [exp]	2.6	0.7730
AT3G17590		CHE1, BSH	BUSHY GROWTH, transcription re...		Lus10013697 [exp]	3.2	0.7972
AT4G01190		ATPIPK10	phosphatidylinositol phosphate...		Lus10003028 [exp]	4.0	0.8383
AT4G35150			O-methyltransferase family pro...		Lus10025440 [exp]	6.2	0.7917
AT5G08630			DDT domain-containing protein ...		Lus10039626 [exp]	8.9	0.7891
AT5G25590			Protein of unknown function (D...		Lus10002864 [exp]	12.8	0.7833
					Lus10018990 [exp]	14.1	0.7756
AT1G01460		ATPIPK11	Phosphatidylinositol-4-phospha...		Lus10007856 [exp]	22.5	0.7460
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10030244 [exp]	24.4	0.7522
AT3G55240			Plant protein 1589 of unknown ...		Lus10003293 [exp]	26.6	0.7633

Compare expression of checked genes

Lus10016789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.