Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36870 359 / 6e-117 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G23760 345 / 1e-112 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT5G41410 247 / 4e-75 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT4G34610 243 / 2e-74 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT1G75410 234 / 4e-71 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT2G16400 231 / 1e-70 HD BLH7 BEL1-like homeodomain 7 (.1) AT1G19700 231 / 8e-70 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT2G35940 226 / 6e-67 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT5G02030 186 / 9e-53 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) AT1G75430 178 / 2e-52 HD BLH11 BEL1-like homeodomain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022485 [exp] 432 / 5e-145 AT4G36870 398 / 5e-128 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10000184 [exp] 241 / 3e-72 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 240 / 3e-72 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10029405 [exp] 240 / 4e-72 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10028802 [exp] 240 / 7e-72 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10004201 [exp] 240 / 1e-71 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10013579 [exp] 229 / 9e-69 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10028770 [exp] 229 / 1e-68 AT5G41410 344 / 2e-110 BELL 1, POX (plant homeobox) family protein (.1) Lus10017513 [exp] 227 / 2e-67 AT5G41410 340 / 1e-108 BELL 1, POX (plant homeobox) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032700 [exp] 371 / 1e-120 AT4G36870 475 / 7e-157 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.005G129500 [exp] 359 / 5e-116 AT4G36870 449 / 1e-146 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.003G131300 [exp] 280 / 3e-87 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1) Potri.001G100800 [exp] 279 / 5e-87 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.004G159300 [exp] 262 / 3e-80 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 253 / 7e-77 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.016G069700 [exp] 249 / 2e-75 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.006G203000 [exp] 247 / 1e-74 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 229 / 9e-68 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.002G031000 [exp] 228 / 9e-68 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10016790 pacid=23149107 polypeptide=Lus10016790 locus=Lus10016790.g ID=Lus10016790.BGIv1.0 annot-version=v1.0 ATGCCGACAGCGCCGTTGTCATCGTCCGACAGGATGGAGCATCAACGAAGGAAGGTGGACAGAAGGTACAACCACTACTGCGAACAGATGCAGATGGTGG TGAACTCGTTCGATCTAGTGATGGGGTATGGGGCAGCAGTTCCATACACAGCGTTAGCGCAGAAGGCGATGTCGAGGCACTTCAGGTGCCTCAAGGACGC CATAGCGGCACAGCTGAAGCAGAGCTGCGAGATGTTGGGTGAGAAAGACTCAGCAGGTGCGGGTGGTGGGGCGGGGATAACGAGAGGGGAGACGCCGAGG CTCAAGGCATTAGAGCAGAGTCTGAGACAGCAACGAGCGTTCCACCAGATGGGAATGATGGAGCAGGAAGCATGGCGACCTCAGCGCGGATTGCCTGAGC GTTCCGTCAACATCCTTCGTGCCTGGCTTTTCGAGCATTTCCTTCACCCATATCCAAGCGATGCGGATAAGCATCTGTTGGCTCGGCAGACTGGTTTATC AAGGAATCAGGTGTCGAATTGGTTCATCAACGCAAGGGTTAGATTGTGGAAACCAATGATCGAGGACATGTACCAGCAAGAGACCAAAGAAGCCGACGAC GACACCAGTCAAGACAATAGAGCACATGATCAACAAGCAGACGTTCAAACCAGCTCACAAACGCCACCGTCGCCGACAACCACCGTCGACATGTTATCTT CTGCGGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGCAGATGACTTACAACCCACCTCCAAGCCGAACCCGTCGCAAACAACCACCGTCGCCATGTTG TCTTCTGCGGTCGGCACAGCAGCAAGTATAAGATCCGGCATCGGCGACGAAAACGACCCTTCGTCGTCATCTCTCATGGTAATTAATAGACAGTGCTTCT CGGAAAACCAAGCCTCAACAACTACTACTACTACTACTACACCAACAACAACAAACATTAATACTACCGGGGCCACCATGATGGATATGCCTTTCCACCA CGACTTCGCCGATGATCCCACGTGTCACCGCCGTGCTGGCATTTCTGCAGATTACGCTGGGACGTCGGTAGGAGGTCATCATCATGTGTCAGCTCATGAT CACACTCTTATTGGGCCTAATACTATTATTACTACTGCACCGCCTATGCAAATTAGGTACGGGACCACCGCCGCGGCCGCTGCCGGAGACGTCTCTCTCA CTTTAGGGCTCCGACATGCCGGAAACATGCCAGAGAAGGCCTCCTCGACCTTCTCCATCCGAGACTTTGGAGACTGCTAG
AA sequence Show only first row Show all	>Lus10016790 pacid=23149107 polypeptide=Lus10016790 locus=Lus10016790.g ID=Lus10016790.BGIv1.0 annot-version=v1.0 MPTAPLSSSDRMEHQRRKVDRRYNHYCEQMQMVVNSFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAIAAQLKQSCEMLGEKDSAGAGGGAGITRGETPR LKALEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMIEDMYQQETKEADD DTSQDNRAHDQQADVQTSSQTPPSPTTTVDMLSSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQADDLQPTSKPNPSQTTTVAML SSAVGTAASIRSGIGDENDPSSSSLMVINRQCFSENQASTTTTTTTTPTTTNINTTGATMMDMPFHHDFADDPTCHRRAGISADYAGTSVGGHHHVSAHD HTLIGPNTIITTAPPMQIRYGTTAAAAAGDVSLTLGLRHAGNMPEKASSTFSIRDFGDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10016790 [exp]	0	1
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10035131 [exp]	1.7	0.9520
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10031972 [exp]	3.2	0.9260
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10007975 [exp]	3.5	0.9257
AT5G56460			Protein kinase superfamily pro...		Lus10010319 [exp]	5.8	0.8698
AT1G49230			RING/U-box superfamily protein...		Lus10005818 [exp]	6.3	0.9239
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10015026 [exp]	6.9	0.9055
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036113 [exp]	7.1	0.9232
AT1G13970			Protein of unknown function (D...		Lus10000174 [exp]	7.4	0.8982
AT2G37730			Protein of unknown function (D...		Lus10010869 [exp]	7.9	0.9058
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002985 [exp]	8.4	0.8989

Compare expression of checked genes

Lus10016790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.