Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36860 659 / 0 DAR1 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) AT1G19270 583 / 0 DA1 DA1 (.1) AT2G39830 511 / 2e-177 LRD3, DAR2 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) AT5G66610 375 / 5e-124 DAR7 DA1-related protein 7 (.1.2) AT5G66620 375 / 8e-123 DAR6 DA1-related protein 6 (.1) AT5G66630 327 / 8e-104 DAR5 DA1-related protein 5 (.1) AT5G17890 337 / 4e-102 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1) AT5G66640 300 / 1e-96 DAR3 DA1-related protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022486 [exp] 919 / 0 AT4G36860 679 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10032736 [exp] 599 / 0 AT1G19270 628 / 0.0 DA1 (.1) Lus10010033 [exp] 576 / 0 AT1G19270 657 / 0.0 DA1 (.1) Lus10016298 [exp] 573 / 0 AT1G19270 646 / 0.0 DA1 (.1) Lus10018789 [exp] 531 / 0 AT1G19270 575 / 0.0 DA1 (.1) Lus10040258 [exp] 514 / 5e-176 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10004690 [exp] 405 / 5e-136 AT2G39830 560 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10000138 [exp] 177 / 6e-53 AT4G36860 203 / 2e-63 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G128900 [exp] 728 / 0 AT4G36860 696 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.007G032500 [exp] 710 / 0 AT4G36860 675 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.005G128800 [exp] 691 / 0 AT4G36860 662 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.002G132700 [exp] 624 / 0 AT1G19270 669 / 0.0 DA1 (.1) Potri.014G039900 [exp] 617 / 0 AT1G19270 654 / 0.0 DA1 (.1) Potri.010G197500 [exp] 516 / 4e-180 AT2G39830 688 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Potri.T124504 [exp] 186 / 2e-54 AT1G19270 182 / 3e-53 DA1 (.1) Potri.009G111446 [exp] 94 / 8e-23 AT2G39830 92 / 7e-23 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF12315 [flax] [poplar] DA1-like Protein DA1 CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00412 [flax] [poplar] LIM LIM domain
Representative CDS sequence Show only first row Show all	>Lus10016791 pacid=23149141 polypeptide=Lus10016791 locus=Lus10016791.g ID=Lus10016791.BGIv1.0 annot-version=v1.0 ATGGGTTGGCTCACAAAGATACTTAAAGGTTCTACCAATAAAGGGAATTACCGCAGCCATTATGGAGAAGACAGAAATAGGGATATTCAGCCCCGTCGTT CAGCGGATAATGCATCAGACTTTGACAAAGATGAAATTGAATGTGCTATTGCCCTTTCCCTTTCAGAAGCTGATGAGAAAGGGAAGAAGGTGATCGCCAA AGTGGTTGAAGAAGAAAGCCGCACAAAAGCACAACTGGAGGAGGATGAACAGCTTGCTAGAGCTATTCAAGAAAGTCTGAGCGTAGAAGAATCTCATCCT CCTAGATCCACAAATGATAGTGGAGGAAGAACCGCATTCCCTCCACCTTATTCATTCTTCTTTCCAACCGGTGGTTACAGGAACCATAAAATGTGGATTT CCTTTCTGTATATTTTCTACAACCATCATGTCTTTGCCTTTGAGCAACTCTTTATTAACAAGAATTATATACTTGGATGTGTCCCAACTAGAATATGTGC TGGCTGCAATGCTGAAATTGGACATGGAAGGTTCCTAAGTTGCATGGATGCTGTTTGGCATCCTGAATGCTTCCGTTGCCAGGCTTGCAATCAACCAATT ACTGACTATGAGTTTTCCATGTCAGGGAATCGACCTTACCACAAATCCTGCTACAAGGAGCGGCATCATCCTAAATGCGATGTCTGCAATAGCTTTATCC CTACAAACTCAGCTGGACTTATTGAGTATAGGGCACACCCTTTCTGGCTTCAAAAGTACTGCCCCTCCCACGAGCGTGATGGAACTCCTCGCTGTTGCAG TTGTGAAAGAATGGAGTCTCGAGACACCAAGTATCTATCACTTGATGATGGTAGAAAGCTATGCCTGGAGTGCTTAGACTCTGCAATCATGGACACTCAT GAATGTCAACCTCTTTACTTTGAAATACGGGAATTCTACGAGGGGTTGAATATGAAAGTGGAGCAGGATGTTCCTTTACTTTTGGTTGAGAGACCAGCAC TGAATGAAGCCATGGAAGGGGAAAAGAGTGGTCATCACCACCTACCTGAAACCAGGGGACTCTGCCTATCAGAAGAACAGACTATCACCACGGTCTTCAG GAGGCCTAGGATTGGACCAGGCTACCGTTTTGTAGAGATAAGGACGGAACCCTACAGGCTAAGCCGCATATGTGAGGTCACAGCAATCCTCATATTGTTT GGTCTTCCCAGATTGTTGACAGGTTCTATCCTTGCCCATGAGCTGATGCATGCTTGGCTTCGCCTGCAAGGCTTTTCAAATCTAAGTCCAGAGGTTGAAG AAGGTATTTGCCAGGTCTTGGCTCACATGTGGCTTGATTCTGAGATATATTCTAGTCCCGGAAATGAGGAAGCATCATCATCATCTTCCTCATCCTCGTC ATCTTCCTCATCGCCATCATCCTCATCATCAACATCATCAAAGAAAGGAAAGCGGTCTGACTTTGAGAAGAAACTTGGCGAGTTTTTCAGACATCAGATT GAGTCGGACACTTCAGAAGCTTATGGTGAAGGGTTCAGGATAGGCAACAAATCAGTCCAGAAATTTGGGTTGAAGAGGACCCTGGATCATATAAGAATCA CAGGAACCTTTCCTTTATAA
AA sequence Show only first row Show all	>Lus10016791 pacid=23149141 polypeptide=Lus10016791 locus=Lus10016791.g ID=Lus10016791.BGIv1.0 annot-version=v1.0 MGWLTKILKGSTNKGNYRSHYGEDRNRDIQPRRSADNASDFDKDEIECAIALSLSEADEKGKKVIAKVVEEESRTKAQLEEDEQLARAIQESLSVEESHP PRSTNDSGGRTAFPPPYSFFFPTGGYRNHKMWISFLYIFYNHHVFAFEQLFINKNYILGCVPTRICAGCNAEIGHGRFLSCMDAVWHPECFRCQACNQPI TDYEFSMSGNRPYHKSCYKERHHPKCDVCNSFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMESRDTKYLSLDDGRKLCLECLDSAIMDTH ECQPLYFEIREFYEGLNMKVEQDVPLLLVERPALNEAMEGEKSGHHHLPETRGLCLSEEQTITTVFRRPRIGPGYRFVEIRTEPYRLSRICEVTAILILF GLPRLLTGSILAHELMHAWLRLQGFSNLSPEVEEGICQVLAHMWLDSEIYSSPGNEEASSSSSSSSSSSSSPSSSSSTSSKKGKRSDFEKKLGEFFRHQI ESDTSEAYGEGFRIGNKSVQKFGLKRTLDHIRITGTFPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10016791 [exp]	0	1
AT3G26890			unknown protein		Lus10035170 [exp]	2.0	0.8730
AT1G13310			Endosomal targeting BRO1-like ...		Lus10034281 [exp]	2.6	0.8224
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10018834 [exp]	3.9	0.8252
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029916 [exp]	7.5	0.8294
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	7.6	0.8361
AT2G31350		GLX2-5	glyoxalase 2-5 (.1.2)		Lus10018625 [exp]	10.6	0.8197
AT5G61670			unknown protein		Lus10016713 [exp]	10.6	0.8280
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	12.8	0.8113
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10002872 [exp]	13.6	0.7900
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	15.5	0.8226

Compare expression of checked genes

Lus10016791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.