Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66631 293 / 2e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18900 56 / 4e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT1G74750 54 / 1e-07 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06400 54 / 2e-07 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G01390 52 / 6e-07 EMB3111 EMBRYO DEFECTIVE 3111, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16710 49 / 3e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 49 / 4e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22670 48 / 7e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16010 48 / 9e-06 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G65560 47 / 2e-05 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022487 [exp] 437 / 4e-143 AT5G66631 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033110 [exp] 60 / 2e-09 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10037592 [exp] 54 / 1e-07 AT1G51965 792 / 0.0 ABA Overly-Sensitive 5 (.1) Lus10039799 [exp] 51 / 6e-07 AT1G03560 473 / 5e-164 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018567 [exp] 52 / 7e-07 AT1G03560 862 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10028525 [exp] 50 / 2e-06 AT2G01390 605 / 0.0 EMBRYO DEFECTIVE 3111, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006850 [exp] 50 / 3e-06 AT1G51965 782 / 0.0 ABA Overly-Sensitive 5 (.1) Lus10038377 [exp] 49 / 5e-06 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017684 [exp] 48 / 1e-05 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G128600 [exp] 381 / 2e-127 AT5G66631 749 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G066400 [exp] 57 / 1e-08 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.005G127500 [exp] 53 / 2e-07 AT2G01390 635 / 0.0 EMBRYO DEFECTIVE 3111, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G105000 [exp] 47 / 2e-05 AT1G51965 855 / 0.0 ABA Overly-Sensitive 5 (.1) Potri.014G121400 [exp] 47 / 2e-05 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 45 / 8e-05 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G326800 [exp] 45 / 9e-05 AT5G14080 684 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G047400 [exp] 44 / 0.0002 AT1G63080 341 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G217600 [exp] 44 / 0.0002 AT1G05750 548 / 0.0 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G084800 [exp] 43 / 0.0003 AT3G48250 715 / 0.0 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016792 pacid=23149064 polypeptide=Lus10016792 locus=Lus10016792.g ID=Lus10016792.BGIv1.0 annot-version=v1.0 ATGAACTTTAGCCGGTTTCCACCAAGCATCGCTCAGTTCAGCAGCCTGAAACAGCAAATTCGTGTCGTTGCTCGTGATCCCTTCCCTAACAAGCTCACTC ATTATCTTCTTCGAGCCGAGCTTATCAATGCCATTCGACTCCAGCTCCGTTTCAAGGAACCCAGCTCGCTCCTAACACTACTCAACAATCGACTATCAGA GGCATTTGTGGTCACGCACGCCATCCGTTCTGTTCCAAATCCCGAGTCTGCGATTTCCCTTGTTGAAATCCTTAAGGATGTCCCTCATTTTCAACACAAT CAAGCTACAGTCCACGCATTTGCCACCGTTCTGGCCAAGTCAGGCAGAACTGGTGAACTGAAGTCCCTCATTCAAGAGATATCCTCGGGTTCGGATGAAG TGGCTATTCCCAATTCGAGAACTTACACAGTTATGATTGAGCATCTTGTTGAGTGTGGGAAACTGGATTCAGCTTTAGAGGTTTTTAATGTTTTGCCAAG GATGAGGGTCAAGAGGACGTCGAAACAGTACTTGGTTTTGGTGGATGGGTTTGTGCAGGCTAAGAGATTTAACGAGGAGTTAAAGGAGGCAGGATTTGTA GAGGAGACGGACTTGCTTCTGGAAGGAATGTTTCCTGACGAGAGGATCAAGAGCATTGTTTCTCGAGAGGAAAGCAGCGATGAGGACATGGATGAGAATA AAGATGAGAGCTTTGAGGTGAGTGGTGCTGTTGATTTGGATGTTCATGATGTTGTCAAGTTGAAACCATGGTTGGATCCAAAAGCATTGGCAGATGCGTT GAGTAAATGGAACCCTGATGTTATAGCCACACTAGAGAGTTCAGAATTTGTATGGACAACTAGGTTGGTATGTAAGGTTCTGAGAAATTTTAAATCGCCA GAAACAGCTTGGGGTTTCTTCTGTTGGGTTGCTTATCAACCAGGTTTCACTCATGACGTTTACACTGTCCAAAGAATGATTGCCATTTTATCCCGGCATG GTAAGGTTGAACTGGTTGATAAACTCATAACAAAAGTAAGAAACGAGGGAATGACAATGCCGTTTAGTACCATCAGATTGATAATTGAGTTCTATGGCAT CTCAGAAAATGCCGATGCTGCTTTAAAGGTCTTCCGTGATGATAGAGCACTGTGTGGTCACATAAACAAATAG
AA sequence Show only first row Show all	>Lus10016792 pacid=23149064 polypeptide=Lus10016792 locus=Lus10016792.g ID=Lus10016792.BGIv1.0 annot-version=v1.0 MNFSRFPPSIAQFSSLKQQIRVVARDPFPNKLTHYLLRAELINAIRLQLRFKEPSSLLTLLNNRLSEAFVVTHAIRSVPNPESAISLVEILKDVPHFQHN QATVHAFATVLAKSGRTGELKSLIQEISSGSDEVAIPNSRTYTVMIEHLVECGKLDSALEVFNVLPRMRVKRTSKQYLVLVDGFVQAKRFNEELKEAGFV EETDLLLEGMFPDERIKSIVSREESSDEDMDENKDESFEVSGAVDLDVHDVVKLKPWLDPKALADALSKWNPDVIATLESSEFVWTTRLVCKVLRNFKSP ETAWGFFCWVAYQPGFTHDVYTVQRMIAILSRHGKVELVDKLITKVRNEGMTMPFSTIRLIIEFYGISENADAALKVFRDDRALCGHINK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66631			Tetratricopeptide repeat (TPR)...		Lus10016792 [exp]	0	1
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019207 [exp]	5.3	0.9036
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022944 [exp]	10.9	0.8898
AT3G19740			P-loop containing nucleoside t...		Lus10040976 [exp]	11.6	0.8701
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10018278 [exp]	14.5	0.8525
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023426 [exp]	16.5	0.8747
AT3G60400			Mitochondrial transcription te...		Lus10013142 [exp]	16.7	0.8310
AT4G30150			unknown protein		Lus10007572 [exp]	17.1	0.8714
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10023360 [exp]	22.2	0.8695
AT1G71210			Pentatricopeptide repeat (PPR)...		Lus10009626 [exp]	30.3	0.8593
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10032922 [exp]	32.2	0.8386

Compare expression of checked genes

Lus10016792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.