Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21630 196 / 1e-54 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT2G33580 191 / 2e-52 Protein kinase superfamily protein (.1) AT1G51940 165 / 2e-43 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G01840 161 / 4e-42 Protein kinase superfamily protein (.1) AT2G17220 147 / 9e-39 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT4G02010 147 / 4e-37 Protein kinase superfamily protein (.1) AT4G31110 145 / 3e-36 Wall-associated kinase family protein (.1) AT3G58690 139 / 1e-35 Protein kinase superfamily protein (.1) AT5G01020 138 / 2e-35 Protein kinase superfamily protein (.1) AT1G80640 137 / 4e-35 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022487 [exp] 1086 / 0 AT5G66631 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019662 [exp] 434 / 6e-148 AT2G33580 198 / 3e-57 Protein kinase superfamily protein (.1) Lus10039406 [exp] 205 / 3e-59 AT2G33580 229 / 4e-68 Protein kinase superfamily protein (.1) Lus10021889 [exp] 200 / 2e-56 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10041171 [exp] 197 / 5e-55 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1) Lus10016299 [exp] 192 / 9e-53 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 192 / 1e-52 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10035301 [exp] 179 / 2e-48 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10022488 [exp] 175 / 5e-47 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032300 [exp] 650 / 0 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1) Potri.005G128401 [exp] 379 / 1e-128 AT2G33580 196 / 1e-57 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 346 / 4e-111 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 327 / 1e-103 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.005G128501 [exp] 246 / 9e-78 AT2G23770 71 / 4e-14 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 244 / 2e-72 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G332800 [exp] 237 / 4e-69 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.005G259600 [exp] 182 / 2e-49 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.005G128200 [exp] 181 / 5e-49 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.002G226600 [exp] 180 / 8e-49 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10016793 pacid=23149121 polypeptide=Lus10016793 locus=Lus10016793.g ID=Lus10016793.BGIv1.0 annot-version=v1.0 ATGGTGGTAATCTCACACCTCATCTTGGTTCTGCTTATTTTCCATTTTAAGACTCTTATTACATCACAGCCACCACCAATCACTGATTTCTCCTGCTCTA CTTATGGGGAGCCTACTCACCCTTGTGACGCCTATGTGTCATACCATGTCCAGTCACCAAACTTCCTGAACCTCGGTAACATTTCTGATCTCTTTGGAGT CAGCCGGTTGTCAATAGCAACTGCCAGTAACTTGGCCTCTGAGGATAGCCCATTGGTTCTGGATCAGCTCTTGCTTGTGCCTATAGAGTGTGGATGCACA GGAAACAGTTCGTTTGCAAACCTCACTTACCAAATCAAGGGAGGTGATAATTTCTACTTGGTCTCGATAACTTCCCTGGAGAATCTAACAAATTGGCAGG TGGCAGAATTATTAAATCCTGATTTGCCGCCAACCTTGTTGCATCCTGGTGATCATGTGGTACTTCCTATATATTGTCAGTGCCCTTCCAGGACTCTGAA AGACAATGGAATTGAGTTTCTCATCACTTATGTCTGGCGGCAAGGAGATGACCTTCAGACAGTGGCTCACAAGCTAGATGCCTCTGTCAATGATATTGGG CTGGCAAACAACTACATGAATTTCAGTGAGGCAGTAAATCGTCCAGTTCTGGTTCCAGTTACTAGATTACCAGTTCTCGTGCCGATTAATCCATCTTCAC GGCAAAGAAGAGACTCAAAGCTGCATTGGATCATCGTTGTAGTAGCAAGCACTGTTGCGGCTCTTCTAATCTTATATCTTGGGGCCTTCCTACTTGGTTT CCAGAGCTCATGTCATAAGAAGAAGTTGCTGGTGCGCAAAAACTCCAACCTAGCAACTGATGAGCTGATGCATGCAAAAAAACTCAAGGGAATAATTAGT TTCGAGCACAAGGCCATCCATGACAATCGTCTTCCAGGAATTTCAGGATATCTAAACAAGCCAACCATTTATAATGTCAATTTGATATTGGAATCCACCT TGGATTTACATGACCATTACAGGATTGGAGGATCAATTTATAGAGCCAGCATCGATGGCCGGGTCTTGGCAGTAAAGAAAATCAACGGGGAAGCAGCTGT GGAGCTGCAGATTCTACAAAAAGTTAACCATGCTAATCTAGTCAAGTTGATGGGAGTTTCGACTGAACTAGAAGGATATTTCTTCTTGGTCTATGAATAT GCACAAAATGGTTCGCTAGACAAGTGGCTATTTCGGAAATCTGCACCATCGACATCAGGGTCTTTGTCCTTCCTCAGTTGGAATAGGAGGCTGCAGATAG CGTTAGATGTGGCAAACGGCTTACAGTACTTGCATGAACATGTGCAACCAAGCATCGCTCACAGGGACATCAGGAGCAGTAATATATTACTAGACTCCAG GTTCAGGGCGAAGATAGCAAATTTCTCAATGGCAAAGTCTGCAGTAGACTCTATAACAACAAAACTTGATGTCTTTGCGTTTGGAGTCGTTTTACTGGAG CTTCTTTCAGGGACTAAGTCAATGGTGACAAAAGAAAACGGGGAGATTGTTTTGATGTCCAAGGAAATCAAGACTGTGCTGGAAGTTGCAGAGAAAAGGG TGAATAGCTTGAGGAATTGGATGGACCCAAACTTGGAGAACTTGTATCCCATTGATGGAGCCCTGAGCTTGGCAGTGTTGGCAAGGGCCTGCACCCTCGA GAAACCTTCAGCAAGGCCAAGCATGGCGGAAGTTGTCTTTAACTTAACAGTTTTGACACAGTCTCCCACAGATTCACTGGAAGAGGCTTGGCCTAGTAGG CTTGAAGGACAAGAGATTTTACATATGTGCAGCCCACTCACTGCTCGTTAA
AA sequence Show only first row Show all	>Lus10016793 pacid=23149121 polypeptide=Lus10016793 locus=Lus10016793.g ID=Lus10016793.BGIv1.0 annot-version=v1.0 MVVISHLILVLLIFHFKTLITSQPPPITDFSCSTYGEPTHPCDAYVSYHVQSPNFLNLGNISDLFGVSRLSIATASNLASEDSPLVLDQLLLVPIECGCT GNSSFANLTYQIKGGDNFYLVSITSLENLTNWQVAELLNPDLPPTLLHPGDHVVLPIYCQCPSRTLKDNGIEFLITYVWRQGDDLQTVAHKLDASVNDIG LANNYMNFSEAVNRPVLVPVTRLPVLVPINPSSRQRRDSKLHWIIVVVASTVAALLILYLGAFLLGFQSSCHKKKLLVRKNSNLATDELMHAKKLKGIIS FEHKAIHDNRLPGISGYLNKPTIYNVNLILESTLDLHDHYRIGGSIYRASIDGRVLAVKKINGEAAVELQILQKVNHANLVKLMGVSTELEGYFFLVYEY AQNGSLDKWLFRKSAPSTSGSLSFLSWNRRLQIALDVANGLQYLHEHVQPSIAHRDIRSSNILLDSRFRAKIANFSMAKSAVDSITTKLDVFAFGVVLLE LLSGTKSMVTKENGEIVLMSKEIKTVLEVAEKRVNSLRNWMDPNLENLYPIDGALSLAVLARACTLEKPSARPSMAEVVFNLTVLTQSPTDSLEEAWPSR LEGQEILHMCSPLTAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10016793 [exp]	0	1
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10033701 [exp]	3.3	0.7766
AT1G02850		BGLU11	beta glucosidase 11 (.1.2.3.4....		Lus10007871 [exp]	8.9	0.7190
AT5G28460			Pentatricopeptide repeat (PPR)...		Lus10018279 [exp]	9.3	0.7584
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	77.9	0.6728
AT3G10430			F-box and associated interacti...		Lus10007848 [exp]	80.7	0.6751
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029283 [exp]	82.6	0.6495
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10012974 [exp]	101.5	0.6591
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10009119 [exp]	102.1	0.6455
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10033768 [exp]	109.7	0.6768
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Lus10020188 [exp]	112.9	0.6724

Compare expression of checked genes

Lus10016793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.