Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23770 212 / 1e-63 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G33580 199 / 3e-58 Protein kinase superfamily protein (.1) AT3G21630 168 / 3e-47 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G51940 167 / 9e-47 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT1G79620 164 / 3e-45 Leucine-rich repeat protein kinase family protein (.1) AT2G28970 162 / 2e-44 Leucine-rich repeat protein kinase family protein (.1) AT2G25220 157 / 2e-44 Protein kinase superfamily protein (.1.2) AT4G29990 162 / 3e-44 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G17220 156 / 3e-44 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G67720 160 / 1e-43 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022488 [exp] 613 / 0 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10018788 [exp] 249 / 5e-77 AT2G23770 312 / 3e-97 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016299 [exp] 248 / 6e-77 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10032735 [exp] 248 / 2e-76 AT2G23770 305 / 1e-94 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10000577 [exp] 231 / 2e-70 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10019661 [exp] 222 / 4e-67 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10041171 [exp] 200 / 3e-59 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1) Lus10008586 [exp] 199 / 2e-58 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10021889 [exp] 197 / 2e-58 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G128300 [exp] 352 / 3e-117 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 291 / 5e-94 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 248 / 6e-77 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 246 / 4e-76 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 218 / 1e-65 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 204 / 2e-60 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 194 / 9e-57 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.008G187500 [exp] 183 / 7e-53 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G156400 [exp] 181 / 5e-52 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.011G010000 [exp] 180 / 1e-51 AT3G21630 673 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10016794 pacid=23149059 polypeptide=Lus10016794 locus=Lus10016794.g ID=Lus10016794.BGIv1.0 annot-version=v1.0 ATGTCTTTGATCCTAACAGGAGCATTTTTGGTCTACCATAAGAAAAAAGGCCTTGAAACTCTAAAGGGGAAAGACAGGAAGAAGAAATTGACCTTGCCAG AGGATTTCCTTGATAGCATGTCCACAGTTGATCAAGGGTTGAGAATCTATGACTTGGAGGAGTTAAAGCTAGCAACTGCCGATTTCAGCCATGACAATCA GTTGAGTGACCGTGTGTACAAGGGTGTTACAAATGGACAAGAAGTAGCTATCAAGAAGATGAGCAGAAATGTTTCAGGTGAAGTGAATTTGCTGAGAAAG ATCAACCATTTCAATCTGATAAGCCTTCTTGCTGCTGCATATGAGCACCAGGGTGAATACTACCTGATCTACAAGTACATGGAGAATGGTTCTTTGAAGG ATTGGTTACAGAAAGGTAGTTTACATCTAGTCCTAAGTTGGAGCCATAGGCTTCAGATTGCTTTGGATATTGCTAATGGACTTCACTATCTTCATAAGTT TACTGAACCTCCATATGTTCACAAAGATATCAGCAGCAGCAATATTCTGTTAGATGCTGATTTGAGGGCTAAGATTGCCAACTTCAGTCTTGCAAGGTCT GCAGAGGCAGACTTGTATGCAAGTTCTTCAATCAGGCTTGCAAAGGGAACAAAAGGTTATCTGGCACCTGAGTACTTAGAGTATGGCTTGGTGATTCCTG AGATTGATGTGTATGCATTTGGGGTCGTTTTAACTGAGCTCATCACTCGAAAAGAAGCCGTATTTTGGCAGAATGAAAGAGAAGATTCAGAGTCCGAGCT TTGCAACTTCATAGATCCTAGCCTGCATCCAAAGCAAAAAATGAGCCTTGTGCTGAGAATGGTTAGGTTGGTTCTAATGTGCTTGGCTAAAGAACCTGAA GATAGACCAAGCATGGGTGAAATAGTTTCTTCACTTTCAAAGATACAACTGGAAGTGTATAGATCCGACTTTATGCATTGTAGCAGTTCATAG
AA sequence Show only first row Show all	>Lus10016794 pacid=23149059 polypeptide=Lus10016794 locus=Lus10016794.g ID=Lus10016794.BGIv1.0 annot-version=v1.0 MSLILTGAFLVYHKKKGLETLKGKDRKKKLTLPEDFLDSMSTVDQGLRIYDLEELKLATADFSHDNQLSDRVYKGVTNGQEVAIKKMSRNVSGEVNLLRK INHFNLISLLAAAYEHQGEYYLIYKYMENGSLKDWLQKGSLHLVLSWSHRLQIALDIANGLHYLHKFTEPPYVHKDISSSNILLDADLRAKIANFSLARS AEADLYASSSIRLAKGTKGYLAPEYLEYGLVIPEIDVYAFGVVLTELITRKEAVFWQNEREDSESELCNFIDPSLHPKQKMSLVLRMVRLVLMCLAKEPE DRPSMGEIVSSLSKIQLEVYRSDFMHCSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23770			protein kinase family protein ...		Lus10016794 [exp]	0	1
AT2G36780			UDP-Glycosyltransferase superf...		Lus10003322 [exp]	4.4	0.9563
AT4G29890			choline monooxygenase, putativ...		Lus10032689 [exp]	5.5	0.9392
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10033999 [exp]	11.7	0.9216
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10001575 [exp]	12.2	0.8918
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036817 [exp]	14.5	0.9325
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	16.2	0.9327
AT2G44420			protein N-terminal asparagine ...		Lus10033495 [exp]	18.0	0.9317
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	21.9	0.9332
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	22.1	0.9295
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	22.1	0.9309

Compare expression of checked genes

Lus10016794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.