Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36850 396 / 6e-137 PQ-loop repeat family protein / transmembrane family protein (.1) AT2G41050 215 / 2e-66 PQ-loop repeat family protein / transmembrane family protein (.1) AT4G20100 118 / 2e-30 PQ-loop repeat family protein / transmembrane family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022491 [exp] 579 / 0 AT4G36850 496 / 2e-174 PQ-loop repeat family protein / transmembrane family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G031800 [exp] 446 / 1e-156 AT4G36850 507 / 0.0 PQ-loop repeat family protein / transmembrane family protein (.1) Potri.016G023400 [exp] 248 / 1e-78 AT2G41050 396 / 1e-136 PQ-loop repeat family protein / transmembrane family protein (.1) Potri.006G025100 [exp] 142 / 7e-39 AT2G41050 210 / 2e-65 PQ-loop repeat family protein / transmembrane family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF04193 [flax] [poplar] PQ-loop PQ loop repeat
Representative CDS sequence Show only first row Show all	>Lus10016795 pacid=23149060 polypeptide=Lus10016795 locus=Lus10016795.g ID=Lus10016795.BGIv1.0 annot-version=v1.0 ATGGGGTACTGCGTTAAAGAAGGAAAGAGTTGCAACGAATGGGTGGAGAGCTACTTCAAGGACTGCCTCTGCAACTTAAAAGACGATTTCTCCTTCGGAT TCGGTTTGGTCAGTTTGGTTTGCTGGGGAGTCGCCGAAATCCCACAAATCATAACCAACTTCCGCACTAAATCCAGTCACGGCGTCTCCCTCGCCTTTCT TCTCCCTTGGATCGCTGGAGACATTTTCAATTTGGTGGGTTGCCTTCTCGAGCCTGCAACGCTGCCCACTCAGTATTACACAGCTGTGCTGTACACAACA AGCACGGTGGTACTAGTGTTACAGGGTCTCTACTACGATTACATTTACAGATGGTTGAAATGCCGCCAGAAGCACCACAAGGTAGATGAAGAAGAAGAAG AAGATGATGAAAAACAACCATTGAGAGAGTCAAAGGCGGTTGATGAATCTGGCATCCCAATCCCAACTAGAGCGGTCCCCGTTCGCAGAGAATTTTACTA CGTGTCAGCAAGATCGTTAGCGGGGAGTGGTACACCACCATTTAGAAACTACCTTAGAGCGGCCAAAAGTGGTCCTTCAGCTGTGAGGCTTATCGACGAT GACTGTTCCTCATCGGAGGGTGAATCGTCAGCAGCACCTCCTGCTTTATCATCATCATCATCACAGCCCAGGCCTATTCCTCGATCCGCTGGTTACGGGA CGTTTTTGGCGACATCACTTAACTTGCCATCCCATGGAAATGCTCTGGCACAAGCTTGCATTGGACTTACCGGTAGAAAGCTTTTACAAGAAGGTGGAAT GGAGTCCAGTGCAGTGGGTCAATGGCTCGGATGGCTGATGGCTGCCATTTACATGGGTGGCCGAATCCCACAGATATGGCTCAATATCAAAAGAGGAAGC GTGGAGGGATTGAATCCTCTGATGTTCATCTTCGCACTGATTGCAAATCTCACCTATGTTCTGAGCATTATTGTTAGAACGACAGAGTGGGACAAAATCA AAGCCAACTTGCCATGGTTGCTGGATGCTGCTGTCTGTGTCCTCCTCGATTTATTCATAATAATGCAGTACATCTACTACAGATACCTTCGAGACAGAGG TAATGGTCCTGAACGTGACGACGACGACAGATATGGGGACTACTACATCAACAATGGAGATGTTGGTAGTAAACAAACCTATTAA
AA sequence Show only first row Show all	>Lus10016795 pacid=23149060 polypeptide=Lus10016795 locus=Lus10016795.g ID=Lus10016795.BGIv1.0 annot-version=v1.0 MGYCVKEGKSCNEWVESYFKDCLCNLKDDFSFGFGLVSLVCWGVAEIPQIITNFRTKSSHGVSLAFLLPWIAGDIFNLVGCLLEPATLPTQYYTAVLYTT STVVLVLQGLYYDYIYRWLKCRQKHHKVDEEEEEDDEKQPLRESKAVDESGIPIPTRAVPVRREFYYVSARSLAGSGTPPFRNYLRAAKSGPSAVRLIDD DCSSSEGESSAAPPALSSSSSQPRPIPRSAGYGTFLATSLNLPSHGNALAQACIGLTGRKLLQEGGMESSAVGQWLGWLMAAIYMGGRIPQIWLNIKRGS VEGLNPLMFIFALIANLTYVLSIIVRTTEWDKIKANLPWLLDAAVCVLLDLFIIMQYIYYRYLRDRGNGPERDDDDRYGDYYINNGDVGSKQTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36850			PQ-loop repeat family protein ...		Lus10016795 [exp]	0	1
AT1G06930			unknown protein		Lus10034209 [exp]	1.4	0.8802
AT5G15240			Transmembrane amino acid trans...		Lus10005239 [exp]	2.6	0.8376
AT1G34770			unknown protein		Lus10033452 [exp]	3.2	0.8394
AT4G14370			Disease resistance protein (TI...		Lus10001352 [exp]	6.2	0.7287
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	6.8	0.8498
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10008622 [exp]	7.3	0.8212
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	11.1	0.8434
AT2G40230			HXXXD-type acyl-transferase fa...		Lus10007509 [exp]	12.6	0.7904
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10030515 [exp]	16.1	0.8423
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10001449 [exp]	18.7	0.8202

Compare expression of checked genes

Lus10016795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.