Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23780 238 / 1e-79 RING/U-box superfamily protein (.1) AT1G19310 215 / 2e-70 RING/U-box superfamily protein (.1) AT1G74990 134 / 4e-40 RING/U-box superfamily protein (.1) AT4G27470 100 / 1e-25 ATRMA3 RING membrane-anchor 3 (.1) AT4G28270 97 / 7e-25 ATRMA2 RING membrane-anchor 2 (.1) AT4G03510 98 / 2e-24 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT3G58030 94 / 5e-22 RING/U-box superfamily protein (.1.2.3.4) AT2G42030 94 / 5e-22 RING/U-box superfamily protein (.1) AT2G44410 83 / 3e-18 RING/U-box superfamily protein (.1) AT2G26350 53 / 4e-08 PEX10, ATPEX10 peroxin 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022492 [exp] 403 / 1e-144 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10016303 [exp] 263 / 2e-89 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10010791 [exp] 261 / 1e-88 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016255 [exp] 110 / 3e-28 AT3G58030 362 / 2e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10029292 [exp] 110 / 4e-28 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4) Lus10021063 [exp] 109 / 9e-28 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10004162 [exp] 109 / 9e-28 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10033697 [exp] 101 / 3e-26 AT4G03510 149 / 1e-44 RING membrane-anchor 1 (.1.2) Lus10011184 [exp] 98 / 9e-25 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G127900 [exp] 324 / 1e-113 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.007G031600 [exp] 288 / 4e-99 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 256 / 1e-86 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.014G040400 [exp] 251 / 1e-84 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.001G401600 [exp] 112 / 5e-30 AT4G27470 205 / 5e-66 RING membrane-anchor 3 (.1) Potri.006G193600 [exp] 112 / 9e-29 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.016G058300 [exp] 110 / 5e-28 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.019G100800 [exp] 100 / 1e-25 AT4G03510 187 / 1e-58 RING membrane-anchor 1 (.1.2) Potri.013G132300 [exp] 99 / 7e-25 AT4G03510 191 / 2e-60 RING membrane-anchor 1 (.1.2) Potri.004G042700 [exp] 97 / 2e-24 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10016796 pacid=23149051 polypeptide=Lus10016796 locus=Lus10016796.g ID=Lus10016796.BGIv1.0 annot-version=v1.0 ATGGCAACTGAATTTGGGGAATCCATGAGTTCGCCAACCCCGGAAAGCTCAACCTATTCCGGAAACTATTCAGGCGATGCTGGTGATTTTGAATGCAATA TCTGCTTGGAATTAGCTCAGGACCCAATAGTCACACTTTGTGGTCATCTCTTCTGCTGGCCTTGTCTGTATAGATGGCTTCATCACCACTCCAACTCCCA CGAGTGCCCTGTTTGCAAGGCTCTGATTCAGGAGGAGAAGTTGGTCCCTCTCTATGGCAGAGGTAAAACGAGGGCTGATCCTCGATCAAAATCTTATCCT GGAATCGATGAAATCCCCAGAAGGCCTACTGGCCAAAGACCAGAAACAGCTCCTCCCCCGAACAACAATGCTCTCCCCAATTACGGTTTTGGGTCGATGG GTGGATTTGTCCCAATGGCCAGCACCAGGATGGGAAACTTCACATTGTCAACTGCGTTTGGTGGTCTATCTCTATTTCCTTCCTTGTTCAACGTTCAGTT TCATGGTTTCCCCGATGCTGCTGTATATGGAAGTCCATCTGGTTTCCCTTATGGGTTCCATAACTTCCATGGTGGCCATGCCAATTGGTTACCACCGCCA ACCACCCGAACACATCAAGCTGACAATGCTTTGAAGAACCTTCTGCTGTTGATTGGTTTCGTTGTAGTCCTCGCACTTCTATGGTCGTAA
AA sequence Show only first row Show all	>Lus10016796 pacid=23149051 polypeptide=Lus10016796 locus=Lus10016796.g ID=Lus10016796.BGIv1.0 annot-version=v1.0 MATEFGESMSSPTPESSTYSGNYSGDAGDFECNICLELAQDPIVTLCGHLFCWPCLYRWLHHHSNSHECPVCKALIQEEKLVPLYGRGKTRADPRSKSYP GIDEIPRRPTGQRPETAPPPNNNALPNYGFGSMGGFVPMASTRMGNFTLSTAFGGLSLFPSLFNVQFHGFPDAAVYGSPSGFPYGFHNFHGGHANWLPPP TTRTHQADNALKNLLLLIGFVVVLALLWS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23780			RING/U-box superfamily protein...		Lus10016796 [exp]	0	1
AT5G60750			CAAX amino terminal protease f...		Lus10024708 [exp]	2.2	0.9302
AT4G27280			Calcium-binding EF-hand family...		Lus10033753 [exp]	3.7	0.9261
AT1G32250			Calcium-binding EF-hand family...		Lus10030986 [exp]	4.5	0.9109
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010238 [exp]	4.9	0.9204
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10028463 [exp]	5.9	0.8499
AT5G42050			DCD (Development and Cell Deat...		Lus10032412 [exp]	6.0	0.8777
AT1G70420			Protein of unknown function (D...		Lus10013011 [exp]	7.3	0.9058
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10001902 [exp]	7.7	0.9082
AT3G53810			Concanavalin A-like lectin pro...		Lus10016506 [exp]	8.5	0.8885
AT5G60750			CAAX amino terminal protease f...		Lus10032326 [exp]	9.2	0.8792

Compare expression of checked genes

Lus10016796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.