Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23790 361 / 3e-124 Protein of unknown function (DUF607) (.1) AT4G36820 324 / 6e-110 Protein of unknown function (DUF607) (.1) AT5G66650 290 / 1e-96 Protein of unknown function (DUF607) (.1) AT5G42610 238 / 7e-77 Protein of unknown function (DUF607) (.1) AT1G57610 178 / 2e-53 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) AT1G09575 169 / 3e-50 Protein of unknown function (DUF607) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022496 [exp] 647 / 0 AT2G23790 371 / 2e-128 Protein of unknown function (DUF607) (.1) Lus10000580 [exp] 407 / 9e-143 AT2G23790 314 / 1e-106 Protein of unknown function (DUF607) (.1) Lus10019663 [exp] 402 / 1e-140 AT2G23790 313 / 4e-106 Protein of unknown function (DUF607) (.1) Lus10010793 [exp] 270 / 3e-88 AT5G42610 270 / 2e-89 Protein of unknown function (DUF607) (.1) Lus10016305 [exp] 256 / 5e-83 AT2G23790 264 / 1e-86 Protein of unknown function (DUF607) (.1) Lus10034435 [exp] 198 / 2e-60 AT1G57610 335 / 6e-115 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10019127 [exp] 138 / 2e-38 AT1G57610 229 / 2e-75 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10005312 [exp] 115 / 3e-32 AT5G66650 70 / 5e-16 Protein of unknown function (DUF607) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G031400 [exp] 375 / 1e-129 AT2G23790 333 / 1e-113 Protein of unknown function (DUF607) (.1) Potri.005G127800 [exp] 367 / 2e-126 AT2G23790 335 / 2e-114 Protein of unknown function (DUF607) (.1) Potri.014G041000 [exp] 271 / 5e-89 AT5G42610 288 / 3e-96 Protein of unknown function (DUF607) (.1) Potri.002G133400 [exp] 269 / 4e-88 AT2G23790 290 / 1e-96 Protein of unknown function (DUF607) (.1) Potri.019G133400 [exp] 175 / 1e-51 AT1G09575 317 / 3e-108 Protein of unknown function (DUF607) (.1) Potri.013G161300 [exp] 172 / 1e-50 AT1G09575 316 / 8e-108 Protein of unknown function (DUF607) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04678 [flax] [poplar] MCU Mitochondrial calcium uniporter
Representative CDS sequence Show only first row Show all	>Lus10016799 pacid=23149164 polypeptide=Lus10016799 locus=Lus10016799.g ID=Lus10016799.BGIv1.0 annot-version=v1.0 ATGGCGTTCAAAAAGACCCTAGCTGAGCGCCTCTTCAAAATCTCCAGAATTTCCCCAAATCAATCCCTAGCCAATTGTCGGATCTCATCTTCCGCTGTTA GGAGTCGGATCCCTCAGAGCAAGTCCAACATCGCTCGTGATCCTGGAGATAATAATGCTGTTTTCCGCCGATTGTTCCACAAAAAGGCCACGGCCACGGC GGACCATCTTCCTAAGCCTTTCCAATTTGGAGGAGGCAACCTGATGGAGAAACTCAGGTCGTTCGACATTGTCAGGGACCGGGTCCGATTGGACGGCCTC CTCCCTCCGCCAGTCGAGAAATCGGATTCGTCGTCGACGACGGGAAAGCACGAGCTGACGATCGACGACGCGAGGAAGTTGCTCCGGGTAGCGCGATTGG AGATGGTGAAATCGAGGCTTGGAGACACGGAAAGAAACTGGATGCCGCGCTCGGAGTTCGTTCGGATCTGCGAAGAAGTTTGTTCGGATACGGAGGAAGG GAACCGGGTCGCCCGGACGCTTGACGAGTCGGGAACTGTAATCGTCTTGGGAGATGCAGTATTCCTCAAACCAAAGCAGGTTGTGAGAGCGATAGGAGGT ATAATACCATTCCCAGCAACGAACCCAAACGACCCAAGAAAGAAGGAGCTGGAACAGTTGGAGCAGCGGAAAGCACTGATCGACGAAAAGGCAAGGAGGC AGGTGAGGAGAGAGCTGTGGGGTGGGCTTGGCTACCTAGTCATCCAAACCGCAGCCTTCATGAGGCTCACATTCTGGGAACTGTCTTGGGACGTGATGGA ACCCATTTGCTTCTACGTCACCTCCATTTATGTAATGGCTGGCTACGCTTTCTTCCTCAGGACCTCCAGAGAGCCAACTTTTGAAGGTTTCTTCCAAAGC CGGTTCCTCGCGAAGCAGAGAAGGCTAATCAAGGCTCACAAGTTCGATGTCGAGAGGTATAATGAGCTGCGGAAGGTCTGTAATTACCCGTATAGAGATG AGGAGGGGGAGGAGGAGCAAGAGCTTTCGTTGTCGGGTATTCATTCAGAATTCGATGGCAAGTTGGGGAAGATTTGTTGA
AA sequence Show only first row Show all	>Lus10016799 pacid=23149164 polypeptide=Lus10016799 locus=Lus10016799.g ID=Lus10016799.BGIv1.0 annot-version=v1.0 MAFKKTLAERLFKISRISPNQSLANCRISSSAVRSRIPQSKSNIARDPGDNNAVFRRLFHKKATATADHLPKPFQFGGGNLMEKLRSFDIVRDRVRLDGL LPPPVEKSDSSSTTGKHELTIDDARKLLRVARLEMVKSRLGDTERNWMPRSEFVRICEEVCSDTEEGNRVARTLDESGTVIVLGDAVFLKPKQVVRAIGG IIPFPATNPNDPRKKELEQLEQRKALIDEKARRQVRRELWGGLGYLVIQTAAFMRLTFWELSWDVMEPICFYVTSIYVMAGYAFFLRTSREPTFEGFFQS RFLAKQRRLIKAHKFDVERYNELRKVCNYPYRDEEGEEEQELSLSGIHSEFDGKLGKIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	0	1
					Lus10017917 [exp]	1.0	0.9848
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	3.5	0.9735
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	3.7	0.9804
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10011658 [exp]	3.9	0.9650
AT5G47720			Thiolase family protein (.1.2....		Lus10039109 [exp]	4.6	0.9751
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10015018 [exp]	4.6	0.9720
AT5G36930			Disease resistance protein (TI...		Lus10007821 [exp]	5.0	0.9738
AT5G53110			RING/U-box superfamily protein...		Lus10032382 [exp]	5.7	0.9650
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10024030 [exp]	6.0	0.9690
AT5G36930			Disease resistance protein (TI...		Lus10007825 [exp]	6.9	0.9614

Compare expression of checked genes

Lus10016799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.