Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22180 69 / 2e-13 hydroxyproline-rich glycoprotein family protein (.1) AT5G21130 66 / 2e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G27080 65 / 4e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000688 [exp] 219 / 3e-70 AT2G22180 98 / 1e-23 hydroxyproline-rich glycoprotein family protein (.1) Lus10019667 [exp] 218 / 3e-70 AT2G22180 102 / 3e-25 hydroxyproline-rich glycoprotein family protein (.1) Lus10025548 [exp] 40 / 0.0003 AT2G27080 107 / 1e-29 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G077100 [exp] 119 / 8e-32 AT2G22180 111 / 8e-29 hydroxyproline-rich glycoprotein family protein (.1) Potri.005G166600 [exp] 63 / 2e-11 AT2G27080 114 / 2e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.009G158900 [exp] 52 / 9e-08 AT2G27080 259 / 8e-87 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.004G197600 [exp] 52 / 1e-07 AT2G27080 264 / 8e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016800 pacid=23149034 polypeptide=Lus10016800 locus=Lus10016800.g ID=Lus10016800.BGIv1.0 annot-version=v1.0 ATGGAGGGGCGGGTCCCAGCCGTTTCCGGCTCCGACCCTAGCCGCGACACCGCTCTAGCGGAAAATAACACCAACAACAACAACAACTCTGTTCCTCCTC AATCTTCAAACCTTTCCCGCGAAATCTCCGATCCTCATCAATTCTCTTCGAAGATCCGACCTGAAACCTACATTGTCCAGATTGCTAAAGACCGAATCTT CAACATACCTCCCACGGAGCACGCCAATATCGTCGTTGATCGAGACCATACCGAGAAGAAACCAAACAACATTTGTTGTACTCCTCGTTGCTTCTCCTAC ATGTTCGGTACTGCTTTATTGACGATTGGCGTGATTGTTGGCGTAACCATAATCGTTGCTCATGCTATAATTCAGCCTAAAGTTCCCATAATCTCGATCG AAAATCTCAAGGTGAAGAACTACGATGCGAAATCAAGTAAAACGGCAGGAATTGACGTCGCCTTCACCGCAAAAGATGATGGGAAGATGAGCATATCCCC GGATGGAAATGGCGATGCAACTTTGATGTACAAGAACATTGAGATCGGGTCAGGTAAGGTTTCCGGGTTGAGAGTCGGGGCGGGTCAATCGAAGACGGGT TCTTTGAAGATTAAGGGAATAAGGAAAGACAAGTTGCCTGGTGTGGTCAAGGCTAGCATGGGGGACAAAAAGGGGAAGAACCCTATTTCAGTGTGGATGA CAATGAGAATCCCGGTAGTGATGAGCGCGTCAGGGGTTCACTCCCAGAATAAAGAGATCGATGTAAATTGTAAACTGAGCTTCAGCTCGTTGGGGGCAGT TAATGGCCTTACATCCCATAAGTGCCATGCCAAGTTCTCATAG
AA sequence Show only first row Show all	>Lus10016800 pacid=23149034 polypeptide=Lus10016800 locus=Lus10016800.g ID=Lus10016800.BGIv1.0 annot-version=v1.0 MEGRVPAVSGSDPSRDTALAENNTNNNNNSVPPQSSNLSREISDPHQFSSKIRPETYIVQIAKDRIFNIPPTEHANIVVDRDHTEKKPNNICCTPRCFSY MFGTALLTIGVIVGVTIIVAHAIIQPKVPIISIENLKVKNYDAKSSKTAGIDVAFTAKDDGKMSISPDGNGDATLMYKNIEIGSGKVSGLRVGAGQSKTG SLKIKGIRKDKLPGVVKASMGDKKGKNPISVWMTMRIPVVMSASGVHSQNKEIDVNCKLSFSSLGAVNGLTSHKCHAKFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22180			hydroxyproline-rich glycoprote...		Lus10016800 [exp]	0	1
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10010554 [exp]	2.4	0.7444
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10039312 [exp]	6.5	0.7540
AT1G73190		ALPHA-TIP, TIP3...	ALPHA-TONOPLAST INTRINSIC PROT...		Lus10036187 [exp]	8.6	0.6526
AT5G65020		ANNAT2	annexin 2 (.1.2)		Lus10041696 [exp]	9.5	0.6982
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019882 [exp]	13.4	0.7212
AT1G76520			Auxin efflux carrier family pr...		Lus10025166 [exp]	14.1	0.6857
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	17.2	0.7303
					Lus10016420 [exp]	17.4	0.7394
AT4G33920			Protein phosphatase 2C family ...		Lus10011521 [exp]	19.5	0.7426
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010866 [exp]	19.7	0.7351

Compare expression of checked genes

Lus10016800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.